Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30078X
         (420 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59970.1 68416.m06693 methylenetetrahydrofolate reductase 1 (...    26   9.0  
At2g47010.2 68415.m05873 expressed protein                             26   9.0  
At2g47010.1 68415.m05872 expressed protein                             26   9.0  
At1g23850.1 68414.m03008 expressed protein                             26   9.0  

>At3g59970.1 68416.m06693 methylenetetrahydrofolate reductase 1
           (MTHFR1) identical to methylenetetrahydrofolate
           reductase MTHFR1 [Arabidopsis thaliana] GI:5911425
          Length = 421

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 223 WLVSKLSHSTYRPHTYTNRTCTHTYAAPLPHTHKHMYI 110
           W+V   S    +   +T RT     +   PHTH H+++
Sbjct: 384 WVVPLKSIEDVQEVGFTLRTLVQIVSISFPHTHLHIFM 421


>At2g47010.2 68415.m05873 expressed protein
          Length = 451

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 238 PPSPSWLVSKLSHSTYRPHTYTNRTCTH-TYAAPLPHTHKHMY 113
           P +P W   K  H+    HT+ N T  H T     P+   H+Y
Sbjct: 340 PETPLWCNPKSLHNCPPYHTFRNGTRVHRTDHRSFPYEAYHVY 382


>At2g47010.1 68415.m05872 expressed protein
          Length = 451

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 238 PPSPSWLVSKLSHSTYRPHTYTNRTCTH-TYAAPLPHTHKHMY 113
           P +P W   K  H+    HT+ N T  H T     P+   H+Y
Sbjct: 340 PETPLWCNPKSLHNCPPYHTFRNGTRVHRTDHRSFPYEAYHVY 382


>At1g23850.1 68414.m03008 expressed protein
          Length = 354

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 165 VLFVYVCGLYVECESLLTSQLGEGGIHLISQALVSILVDADLVFEPVD 308
           VLF+++C L + C  +      +  + L SQ LV  L + D  + P D
Sbjct: 27  VLFLFLCSLPLFCFLIFFELSLQTTVSLASQYLVRQLTNWDYYYVPQD 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,482,066
Number of Sequences: 28952
Number of extensions: 108535
Number of successful extensions: 311
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)