Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30074X
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   1.2  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   1.2  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   2.9  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    25   3.8  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   5.0  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   5.0  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    24   6.7  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    24   8.8  

>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 288 CKILNMQFFFFVSQTKIYTL*GSNV 214
           CK++  QFF  + +T  YTL  +NV
Sbjct: 278 CKVIVYQFFLRIPETDTYTLVVNNV 302


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 288 CKILNMQFFFFVSQTKIYTL*GSNV 214
           CK++  QFF  + +T  YTL  +NV
Sbjct: 278 CKVIVYQFFLRIPETDTYTLVVNNV 302


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 218 LDP*SVYIFVWLTKKKNCIFS 280
           LDP   YIFV  T   NC+F+
Sbjct: 102 LDPSGHYIFVTTTAGDNCLFT 122


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 211 YERVFCNVVDIYLYYLLPWS 152
           Y  VF  +VD++L + L W+
Sbjct: 286 YPPVFAKIVDLFLRFFLSWT 305


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 268 ILFFCKPNKNIYTLGI*CFYERVFCNVVDIYLYYLLPWSMY 146
           I F    +K++  LGI   +  +F + +  Y  YLL  S++
Sbjct: 119 ISFLAFRSKDVVLLGIVSCFASIFFHAIACYALYLLTKSIF 159


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 288 CKILNMQFFFFVSQTKIYTL*GSNV 214
           CK++  QFFF V  T  ++L  +NV
Sbjct: 481 CKVIVYQFFFRVPVTDTFSLDVTNV 505


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 11  NDIALLDVKWRVRGVHVRV 67
           NDIALLD +W +    +RV
Sbjct: 144 NDIALLDSRWSMMFTKLRV 162


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 280 YFTDFRSSSTANV*KVTFSTKNLNSPFL 363
           Y  D    +  N  KVTF   ++NSP L
Sbjct: 731 YLKDLPDRNVGNSEKVTFQEDDINSPKL 758


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,406,357
Number of Sequences: 5004
Number of extensions: 26914
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)