Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30074X
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0925 - 12440917-12441560,12441675-12441810                       31   0.29 
01_01_0017 + 133311-133615,133698-133824,133912-134253                 29   1.2  
06_01_0900 + 6926600-6927202                                           28   2.0  
05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868...    27   6.2  
01_06_1408 - 37088014-37088448,37088892-37089167,37090777-37092297     26   8.2  

>03_02_0925 - 12440917-12441560,12441675-12441810
          Length = 259

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 219 NVFTKGYFVTLLIFIYIIYYRGVCIESASECVGCTCAREHRRDTPPTSAPHTRTCT 52
           N++++GY  +       ++ RG+   S   C    CA +HRR   P  A  T T T
Sbjct: 53  NLYSQGYGTSTAALSTALFNRGL---SCGSCYELRCAGDHRRSCLPGGATVTVTAT 105


>01_01_0017 + 133311-133615,133698-133824,133912-134253
          Length = 257

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 141 SASECVGCTCAREHRRDTPPTSAPHTRT 58
           S+S      C +   R+ PP  APHT T
Sbjct: 6   SSSTASAAACCKSRSRNPPPAPAPHTST 33


>06_01_0900 + 6926600-6927202
          Length = 200

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 72  VRRWGACLGGARARTCIRRTRSHSRYILHG 161
           VR W   + G R +T IRR R   R+  HG
Sbjct: 76  VREWSELVAGPRWKTFIRRFRRSPRHHHHG 105


>05_03_0355 -
           12885898-12886290,12886351-12886644,12886744-12886871,
           12886952-12888482
          Length = 781

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 222 IPKVYIFLFGLQKKRIAYLVFYRFSLIINS 311
           +PKV++ +FGL+KK   YL  +    ++ +
Sbjct: 657 LPKVWVKVFGLRKKLREYLTLWAVGSLLGA 686


>01_06_1408 - 37088014-37088448,37088892-37089167,37090777-37092297
          Length = 743

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 192 TLLIFIYIIYYRGVCIESASECVGCTCAREHRRDTPPTSAPHTRTCTPR 46
           TLL+ ++ + +      SAS+ VGC+C    RR    T+      C+PR
Sbjct: 683 TLLLRVFSVSHAAAA--SASQVVGCSCQVRLRR-RALTTRRRELPCSPR 728


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,426,893
Number of Sequences: 37544
Number of extensions: 152050
Number of successful extensions: 450
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)