Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30072
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   2.7  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   4.7  
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.2  
SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.2  

>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -2

Query: 445 HLGST--WRPKISKRSTTKHKNGL 380
           H GST  W    + RST+KH+N L
Sbjct: 417 HAGSTQEWHSHTTPRSTSKHENNL 440


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 251 SLKCIYFCLAYKKKRIAYLVFYSFSLIIN----S*CIKSYVFNEK 373
           SLK +  CL  KK+R+A       SL IN      C++ +V  EK
Sbjct: 268 SLKNVVTCLDCKKERVAVDPLMDISLDINEPTLQGCLERFVSKEK 312


>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 176 TYSTVINNINKYQQRYKIAFRKNIRSLK 259
           +YS  + N+  Y QR ++A   N+  LK
Sbjct: 172 SYSPALKNVLNYSQRERVANLANVSILK 199


>SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 466 LTASAPSHLGSTWRPKISK--RSTTKHKNGL 380
           L   AP++ G TW  ++SK  RS    K GL
Sbjct: 59  LYEKAPAYTGHTWYGRVSKHTRSLKTFKKGL 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,389
Number of Sequences: 5004
Number of extensions: 41278
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)