Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30066
         (354 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.82 
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_25377| Best HMM Match : Phospholip_A2_2 (HMM E-Value=1.6)           28   1.9  
SB_36814| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-21)           28   2.5  
SB_51055| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               27   3.3  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          26   7.7  

>SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1116

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 84  RIFFCLGKGTYRGVFAXLIFTQ-LGYDSIXPPKVSGAFCF 200
           R+  CL    + G+F+ L+  Q LGYD + P    G F F
Sbjct: 347 RLMKCLPYLVWLGIFSQLLVDQVLGYDPLTPSDSVGMFAF 386


>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 183 SGAFCFLRVCYKIKGKDTIELPDVTALKATKFIRDW 290
           S  F F+R   K   +D ++  D T L A KF+  W
Sbjct: 56  SRGFAFVRFYEKRDAEDAMDCMDATCLMAEKFVFRW 91


>SB_25377| Best HMM Match : Phospholip_A2_2 (HMM E-Value=1.6)
          Length = 129

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 180 VSGAFCFLRVCYKIKGKDTIELPDVTALKATKFIRDWLQS*PLDPRRS 323
           + G  C++ VC+ ++  +  ELP    L++      W +  PL P +S
Sbjct: 53  ILGDVCYVVVCFSVESCEVAELPFNDGLRSVVVYMAW-KKIPLSPTQS 99


>SB_36814| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-21)
          Length = 436

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 123 VFAXLIFTQLGYDSIXPPKVSG-AFCFL 203
           +FA  +FT +GY +I P  + G  FC L
Sbjct: 232 LFACTVFTTVGYGNIAPLTIKGRVFCML 259


>SB_51055| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 456

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 159 DSIXPPKVSGAFCFLRVCYKIKGK----DTIELPDVTALKATKFIRDWLQS*PLDP 314
           D I   +V+     L  C + +G     +T+EL +    K  K   DWL+S  LDP
Sbjct: 369 DKITVEEVNNTSDMLYHCMEAQGNKIVTETLELSEPLTRKVNKTCLDWLKSTFLDP 424


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 296 LEPIPDKFSGLQGCYIREFDGVLPFDF 216
           LEP+ D+ SG + CY     G  P DF
Sbjct: 2   LEPLMDEVSGFELCYRASKHGFNPADF 28


>SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 281 DKFSGLQGCYIREFDGVLPFDFVTNSKEAECTRY 180
           DK+  L+G ++R  D  +    +TN+ E +  RY
Sbjct: 889 DKWPHLEGVHVRNIDAEIGLLIITNTSELKDGRY 922


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 337  FGSL*LRRGSRGQLWSQSLINL---VAFKAVTSGSSMVSF 227
            F ++   +G +G +W+++ IN+   V F+ V  G   VSF
Sbjct: 2475 FNTIWSMKGDQGDIWNRAEINITSGVNFQVVIEGKRGVSF 2514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,713,429
Number of Sequences: 59808
Number of extensions: 195309
Number of successful extensions: 345
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)