Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30066
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.46 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   1.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   7.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   9.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 0.46
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +3

Query: 156 YDSIXPPKVSGAFCFLRVCYKIKGKDTIELPDVTALKATKFIRDW 290
           YD + PPK  G    +     + G D+I+   +T      F + W
Sbjct: 48  YDKMRPPKKDGQATVVYFHVTVMGLDSIDENSMTYAADIFFAQTW 92


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = -3

Query: 319 RRGSRGQLWSQS-----LINLVAFKAVTSGSSMVSFPLIL*QTRRK 197
           R+G     WS S     LIN+  F   ++  +M +FP +  +TRR+
Sbjct: 159 RKGFLRTRWSISGTVFDLINIHLFHDASNFIAMETFPSVYSKTRRR 204


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 219 IKGKDTIELPDVTALKATKFIRDWLQS*PLD 311
           +KG D IE P      AT  I+   +  P +
Sbjct: 578 LKGIDAIEFPRSITRNATALIKKLCRDNPAE 608


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 51  KRLCLKNANYVRIFFCL 101
           +R+ + N N++   FCL
Sbjct: 273 ERMIIANLNFILHLFCL 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,730
Number of Sequences: 438
Number of extensions: 1562
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)