Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30063
(825 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 27 3.2
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 4.3
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 27 4.3
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 5.6
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi... 26 5.6
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 5.6
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 26 7.5
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 26 7.5
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 25 9.9
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 9.9
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 9.9
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 25 9.9
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 9.9
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 9.9
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 52 LEIWRIENFEPVAVPKTQFGLFYSGDS 132
L IW I+NFE + P + LF+S S
Sbjct: 561 LYIWNIKNFEAIHSPVSTLPLFHSNFS 587
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 691 NKEAIADAEEGGDDQEFECVVTKEVSLSEISDKTGSI 801
NK+ +++ DD E + ++LS IS K GSI
Sbjct: 61 NKQILSERSVTRDDYEKGKTIVSSLALSSISGKDGSI 97
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 536 VRRRKESRG*KPSP*PTRLKTRITMEGPISKWLTPK 643
VR RK SR KP+ P +L+T + + I++ TPK
Sbjct: 288 VRFRKMSRKRKPTLLPLKLQTPVPSDIEIARSQTPK 323
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 206 PARTKPARRPSSR*TWTTNNSRDQRYSTERSNITSPRSS*NIS 334
PA ++ ++PSS+ T SR+Q S S + S + N+S
Sbjct: 1251 PAISESRKKPSSKDTKIETPSREQSRSQTASPVKSEKDDGNVS 1293
>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
Tom22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 659 KIPSCASESTTSISALPL*SWSLIWLATVMAFILSTPFAFS 537
KI A +TT +S L +W+ + A +L PF S
Sbjct: 69 KIADGAKTATTGLSKLAQFGGKSMWVISTSALLLGVPFMMS 109
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 503 KMKQSPLFKDSNVGFTCLTRTFLLPLIWKSRFSVPSLIVT 384
K K+ +F F + +LPL+++ + ++PSL VT
Sbjct: 476 KRKRKIIFIGFGEEFLTFSENLVLPLLFQIKIALPSLAVT 515
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +1
Query: 346 RYLKGGHASGFSHVTINEGTEKRLFQI---KGKRNVRVK--QVKPTFESLNNGDCFILDV 510
RYL GH++ S + + +E + ++ K K V K V + +N C ++
Sbjct: 496 RYLSNGHSATLSDLLLGILSEIKYYEYLVRKNKETVEEKWENVMELVQQSDNISCIFYEL 555
Query: 511 DHQIFVFV 534
D++I V
Sbjct: 556 DYKISTIV 563
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 7.5
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -1
Query: 819 GESGYPDAASLIGDLTQGHLLR 754
G GY D+++++ D+ Q HL++
Sbjct: 229 GRGGYFDSSTIVRDIVQNHLVQ 250
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 617 PISKWLTPKRTMESSTGSSMPSAPATRRPSLMPKKGATIKS 739
P LT +T SST ++P PA+R + PK+G I S
Sbjct: 215 PALSMLT-SQTSSSST-LNLPPEPASREVKIFPKQGKRIFS 253
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 583 NQIKDQDHNGRADIEVVDSEAHDGIF 660
N + D+ HN +D E V+ AH+ F
Sbjct: 297 NLLGDEVHNPFSDFETVEDRAHEAEF 322
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 134 TLY*TPQAIRTV*HGTSISGSARGPARTKPARRPSSR 244
T+Y P A+ T +GT+I + P P SR
Sbjct: 187 TIYGIPDALHTTQNGTTIHVTGTPPGAVSQRSEPDSR 223
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 280 VQHREVQYYESKEFLEYFSPAIRYLKGGHASG 375
+QH E++ Y K LEY K G ++G
Sbjct: 865 IQHEEMKAYRRKNDLEYIDQHFASSKSGISNG 896
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 9.9
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +2
Query: 179 TSISGSARGPAR--TKPARRPSSR*TWTTNNSRDQRYSTERSNITSPRSS*NISHQPSAI 352
TS SGS+ A + A +PS++ + + NS + SN+ S SS +P+A
Sbjct: 215 TSTSGSSSNVAAEVSNDASQPSNQDS--SLNSNIVKPPLPPSNVQSNSSSSENVPKPNAE 272
Query: 353 *KADTPQASAT*RSMREQRNDS 418
+ D P A S+ E NDS
Sbjct: 273 TQEDLPTIDAHESSLYENVNDS 294
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 509 TSKMKQSPLFKDSNVGFTCLTRTFLLPLIWKSRFSVPSLI 390
+SK+ Q +KDS TC T F L L W SR + + +
Sbjct: 756 SSKLDQFAFYKDSKQSSTC-TINFPLAL-WDSRLRIETKV 793
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.136 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,336,035
Number of Sequences: 5004
Number of extensions: 70195
Number of successful extensions: 265
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -