Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30061
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   2.1  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    27   2.8  
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.8  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   8.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   8.5  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -1

Query: 214 VGAESWASMDSDARAQPVAVKISIVTQVSAALLNGFTGFRVAQNRGNHEKNCNE 53
           VG   W ++         A+++  V +VSA  ++G  G  V +   N E N  +
Sbjct: 636 VGISLWTNLSMFKHVSTKALRLDDVVEVSAPSVSGEKGISVVEAALNVESNAED 689


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 484 GVRYANSDWVWHRSVDGNRVRSWNGY 407
           G+R+A+   +W      +++RSWN Y
Sbjct: 91  GIRFADLRELWEYEPKHDKIRSWNTY 116


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 115 NGFTGFRVAQNRGNHEKNCNESLHFSLY 32
           N +   R+  NR N   NC   L FSLY
Sbjct: 32  NVYFSLRILLNRQNEGNNCKYKLVFSLY 59


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 456 TQSELAYLTPWTAPTPYPSPDLTQ*PLRSTSPYQSTGPY 572
           T S L +  P+T      S D+   PL S  P +S+ PY
Sbjct: 218 TSSPLQHKRPFTNVPERVSRDIEFAPLDSARPSESSSPY 256


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 694  SHWSGYWYGNRPGY 653
            S WSG WYG   GY
Sbjct: 1782 SWWSGKWYGKGYGY 1795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,379
Number of Sequences: 5004
Number of extensions: 34726
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)