Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30061
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0237 - 16723400-16723594,16723658-16723712,16724016-167241... 31 1.3
11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793 30 1.7
03_05_0308 - 22977542-22978174,22978202-22978387 29 5.1
08_02_0459 + 17420156-17420976,17422291-17424199 28 6.7
03_05_0222 + 22082863-22082938,22083261-22083333,22083451-220834... 28 6.7
08_02_0064 - 11848060-11848476,11848518-11849090 28 8.9
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645... 28 8.9
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888... 28 8.9
05_03_0428 + 13899295-13899669 28 8.9
03_01_0377 + 2940333-2940418,2940512-2940658,2940741-2940809,294... 28 8.9
>02_03_0237 -
16723400-16723594,16723658-16723712,16724016-16724126,
16724545-16724809,16725155-16725716
Length = 395
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +3
Query: 417 QLRTLLPSTDLCHTQSELAYLTPWTAPTPYPSPDLTQ*PLRSTSPYQSTGPYRYPYLMQY 596
Q + P+ + +T + A +P +PTP SP PLR + Y+ P+ PY +
Sbjct: 147 QCTSTTPTPSVPNTAAPPAPPSPPISPTPPGSPLPQISPLRVPNEYEYGKPF-LPYNLMC 205
Query: 597 PYPWS 611
PWS
Sbjct: 206 ELPWS 210
>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
Length = 576
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = +3
Query: 399 TSEYPFQLRTLLPSTDLCHTQSELAYLTPWTAPTPYPSPDLTQ*PLRSTSPYQSTGPYRY 578
T YP LL D+ T+S YL T P P+P++ PL ST Q
Sbjct: 427 TPPYPPAFHALLGEVDMLATES-APYLVDPTVTQP-PAPEIVHTPLISTPSLQPGSSLET 484
Query: 579 PYLMQY 596
P + Y
Sbjct: 485 PIQVDY 490
>03_05_0308 - 22977542-22978174,22978202-22978387
Length = 272
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 399 TSEYPFQLRTLLPSTDLCHTQSELAYLTPWTAPTPYPSPDLTQ*PLRSTSPYQ 557
T YP L LL D+ T+S YL T P P+P++ PL TS Q
Sbjct: 123 TPPYPPALHALLGEVDMLVTES-APYLVDPTVTQP-PAPEIVHTPLIPTSSPQ 173
>08_02_0459 + 17420156-17420976,17422291-17424199
Length = 909
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 10 SEIVTTTNIKKNEGFHCSSFRGCLGSGRP 96
S+I+TTT I CSSFRG L + RP
Sbjct: 302 SKIITTTRISDVARSCCSSFRGHLYNIRP 330
>03_05_0222 +
22082863-22082938,22083261-22083333,22083451-22083496,
22083639-22083753,22083847-22083926,22084022-22084621,
22084718-22084822,22084916-22085248
Length = 475
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 170 STRGRKDQHSDPGVRCASEWFYWVQGRPEPRQPRKE 63
ST G DQ + +R A V+G+PEP +P+K+
Sbjct: 415 STGGTVDQKTIDSIRQAIGQNIQVKGQPEPSEPQKK 450
>08_02_0064 - 11848060-11848476,11848518-11849090
Length = 329
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 619 WSTSPRSVPSGGTQACCRTSTRSSGCTLCEIRHRRPR 729
W+ PR++P GG+ + + S TL RR R
Sbjct: 170 WTDEPRAIPRGGSFSITAANEESRTATLLPPSQRRAR 206
>06_03_1108 -
27661916-27662812,27662889-27663529,27663613-27664592,
27664854-27664934,27668582-27668634,27669294-27669308,
27670069-27670296
Length = 964
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 523 VRSGDGYGVGAVHGVRYANSD 461
VRSG G G GA HGV NS+
Sbjct: 274 VRSGGGGGGGAAHGVLLLNSN 294
>06_01_1084 +
8883301-8883515,8883736-8884063,8884764-8885022,
8885581-8885681
Length = 300
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 619 WSTSPRSVPSGGTQACCRTSTRSSGC 696
W+ P S GT +C R +RSS C
Sbjct: 121 WTRPPSSTRPSGTSSCSRWRSRSSVC 146
>05_03_0428 + 13899295-13899669
Length = 124
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 622 STSPRSVPSGGTQACCRTSTRSSGCTLCEIRHRRPR 729
STS RS S CCR TR T ++ R R
Sbjct: 87 STSSRSCRSPAPVCCCRHQTRPPSVTAAPVKRLRGR 122
>03_01_0377 +
2940333-2940418,2940512-2940658,2940741-2940809,
2940958-2941123,2941208-2941436,2941528-2942054
Length = 407
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 71 VVASVLGDPEPSKTIQKRSGHLGHYADLYGHGLSSGIAVHAGPAF 205
VVA LG +PS + + + L HY D GHGL + G F
Sbjct: 167 VVAKWLGLTKPSSSGRLATRGLAHYPD--GHGLDPRFKMFVGHGF 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,564,463
Number of Sequences: 37544
Number of extensions: 281715
Number of successful extensions: 1180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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