Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30061
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    29   2.6  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    29   2.6  
AC024817-29|AAK68530.1|  280|Caenorhabditis elegans C-type lecti...    28   6.0  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
            repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 477  LTPWTAPTPYPSPDLTQ*PLRSTSPYQSTGPYRYPYLMQYPY 602
            ++ W    P P+   T+ PLR TSP    G      ++Q+ Y
Sbjct: 1356 MSQWNVRCPSPAGSPTKSPLRRTSPTDQNGVGSEDVMLQFTY 1397


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
            kinase protein.
          Length = 2393

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 477  LTPWTAPTPYPSPDLTQ*PLRSTSPYQSTGPYRYPYLMQYPY 602
            ++ W    P P+   T+ PLR TSP    G      ++Q+ Y
Sbjct: 1354 MSQWNVRCPSPAGSPTKSPLRRTSPTDQNGVGSEDVMLQFTY 1395


>AC024817-29|AAK68530.1|  280|Caenorhabditis elegans C-type lectin
           protein 85 protein.
          Length = 280

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 483 PWTAPTPYPSPDLTQ*PLRSTSPYQSTGPYRYPYLMQYPYPWSNKLEYQSPLRT 644
           P +  T YP+  +T  P    + Y ++G   YP      YP S    Y +   T
Sbjct: 166 PVSGATEYPASSMTDSPASGATGYPASGATGYPVSGATGYPVSGATGYPASSMT 219


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/52 (25%), Positives = 19/52 (36%)
 Frame = +3

Query: 483 PWTAPTPYPSPDLTQ*PLRSTSPYQSTGPYRYPYLMQYPYPWSNKLEYQSPL 638
           P+  P P+P P     P     P     P+  P L   P P    + +  P+
Sbjct: 166 PFPNPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPM 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,434,663
Number of Sequences: 27780
Number of extensions: 207998
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)