Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30060
         (423 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L32610-1|AAD45179.1|  346|Homo sapiens ribonucleoprotein protein.      29   4.9  
BC039824-1|AAH39824.1|  331|Homo sapiens heterogeneous nuclear r...    29   4.9  
BC004511-1|AAH04511.2|  207|Homo sapiens HNRPH3 protein protein.       29   4.9  
AL117395-1|CAB55897.1|  215|Homo sapiens hypothetical protein pr...    29   4.9  
AK223441-1|BAD97161.1|  346|Homo sapiens heterogeneous nuclear r...    29   4.9  
AF132364-1|AAF68852.1|  139|Homo sapiens hnRNP 2H9E protein.           29   4.9  
AF132363-1|AAF68851.1|  145|Homo sapiens hnRNP 2H9D protein.           29   4.9  
AF132362-1|AAF68850.1|  297|Homo sapiens hnRNP 2H9B protein.           29   4.9  
AF132361-1|AAF68849.1|  331|Homo sapiens hnRNP 2H9A protein.           29   4.9  
AF132360-6|AAF68846.1|  139|Homo sapiens hnRNP 2H9E protein.           29   4.9  
AF132360-5|AAF68845.1|  145|Homo sapiens hnRNP 2H9D protein.           29   4.9  
AF132360-4|AAF68848.1|  215|Homo sapiens hnRNP 2H9C protein.           29   4.9  
AF132360-3|AAF68844.1|  297|Homo sapiens hnRNP 2H9B protein.           29   4.9  
AF132360-2|AAF68847.1|  331|Homo sapiens hnRNP 2H9A protein.           29   4.9  
AF132360-1|AAF68843.1|  346|Homo sapiens hnRNP 2H9 protein.            29   4.9  

>L32610-1|AAD45179.1|  346|Homo sapiens ribonucleoprotein protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 157 NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 192


>BC039824-1|AAH39824.1|  331|Homo sapiens heterogeneous nuclear
           ribonucleoprotein H3 (2H9) protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 142 NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 177


>BC004511-1|AAH04511.2|  207|Homo sapiens HNRPH3 protein protein.
          Length = 207

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 18  NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 53


>AL117395-1|CAB55897.1|  215|Homo sapiens hypothetical protein
           protein.
          Length = 215

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 26  NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 61


>AK223441-1|BAD97161.1|  346|Homo sapiens heterogeneous nuclear
           ribonucleoprotein H3 isoform a variant protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 157 NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 192


>AF132364-1|AAF68852.1|  139|Homo sapiens hnRNP 2H9E protein.
          Length = 139

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 20  NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 55


>AF132363-1|AAF68851.1|  145|Homo sapiens hnRNP 2H9D protein.
          Length = 145

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 26  NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 61


>AF132362-1|AAF68850.1|  297|Homo sapiens hnRNP 2H9B protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 108 NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 143


>AF132361-1|AAF68849.1|  331|Homo sapiens hnRNP 2H9A protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 142 NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 177


>AF132360-6|AAF68846.1|  139|Homo sapiens hnRNP 2H9E protein.
          Length = 139

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 20  NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 55


>AF132360-5|AAF68845.1|  145|Homo sapiens hnRNP 2H9D protein.
          Length = 145

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 26  NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 61


>AF132360-4|AAF68848.1|  215|Homo sapiens hnRNP 2H9C protein.
          Length = 215

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 26  NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 61


>AF132360-3|AAF68844.1|  297|Homo sapiens hnRNP 2H9B protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 108 NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 143


>AF132360-2|AAF68847.1|  331|Homo sapiens hnRNP 2H9A protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 142 NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 177


>AF132360-1|AAF68843.1|  346|Homo sapiens hnRNP 2H9 protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH 344
           N  G+ N  +D  + R     GG GY G GD S G H
Sbjct: 157 NNYGYGNDGFDD-RMRDGRGMGGHGYGGAGDASSGFH 192


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,399,871
Number of Sequences: 237096
Number of extensions: 881154
Number of successful extensions: 2995
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2993
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3259265358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)