Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30052X
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0238 + 23839763-23840251,23841389-23841555,23841632-23842280     27   3.9  
06_03_0902 - 25806912-25807190,25807876-25808094,25809469-258097...    27   6.9  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    26   9.1  

>04_04_0238 + 23839763-23840251,23841389-23841555,23841632-23842280
          Length = 434

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 364 TIPSAWVARSVCW 326
           T PSAW+ARSV W
Sbjct: 394 TTPSAWLARSVSW 406


>06_03_0902 -
           25806912-25807190,25807876-25808094,25809469-25809711,
           25809810-25809974,25810141-25810721,25810940-25811048,
           25811158-25811250,25811474-25811535,25811895-25811967,
           25812879-25813007,25814107-25814229
          Length = 691

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 383 RNTIWPHYPQ 354
           RNTIWPH PQ
Sbjct: 44  RNTIWPHNPQ 53


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 197  QRHHVTPPKVDDSKDFP 147
            QR  +TPPK+D +KD P
Sbjct: 1528 QRAAITPPKLDAAKDAP 1544



 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 197  QRHHVTPPKVDDSKDFP 147
            QR  +TPPK+D +KD P
Sbjct: 1819 QRAAITPPKLDAAKDAP 1835


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,858,760
Number of Sequences: 37544
Number of extensions: 98307
Number of successful extensions: 215
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)