Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30051
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 276 1e-74
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 276 1e-74
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 274 3e-74
SB_56| Best HMM Match : Actin (HMM E-Value=0) 274 3e-74
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 274 4e-74
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 272 1e-73
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 249 2e-66
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 9e-21
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 85 5e-17
SB_54| Best HMM Match : Actin (HMM E-Value=0) 84 9e-17
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 67 1e-11
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 38 0.010
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 33 0.22
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_20153| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 30 2.0
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 2.7
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 4.7
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85) 28 8.1
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 276 bits (677), Expect = 1e-74
Identities = 127/136 (93%), Positives = 131/136 (96%)
Frame = -2
Query: 687 YELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANPVM 508
YELPDGQVITIGNERFRCPEAL QPSFLGMES GIHET YNSIMKCDVDIRKDLYAN VM
Sbjct: 214 YELPDGQVITIGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVM 273
Query: 507 SGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 328
SGGTTMYPG+ADRMQKEI+ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK
Sbjct: 274 SGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 333
Query: 327 EEYDESGPGIVHRKCF 280
+EYDESGP IVHRKCF
Sbjct: 334 QEYDESGPAIVHRKCF 349
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 276 bits (676), Expect = 1e-74
Identities = 126/136 (92%), Positives = 131/136 (96%)
Frame = -2
Query: 687 YELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANPVM 508
YELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYAN V+
Sbjct: 203 YELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVL 262
Query: 507 SGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 328
SGGTTMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK
Sbjct: 263 SGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 322
Query: 327 EEYDESGPGIVHRKCF 280
+EYDESGP IVHRKCF
Sbjct: 323 QEYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 274 bits (673), Expect = 3e-74
Identities = 125/136 (91%), Positives = 131/136 (96%)
Frame = -2
Query: 687 YELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANPVM 508
YELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYAN V+
Sbjct: 241 YELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVL 300
Query: 507 SGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 328
SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK
Sbjct: 301 SGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 360
Query: 327 EEYDESGPGIVHRKCF 280
+EYDESGP IVHRKCF
Sbjct: 361 QEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 274 bits (673), Expect = 3e-74
Identities = 125/136 (91%), Positives = 131/136 (96%)
Frame = -2
Query: 687 YELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANPVM 508
YELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYAN V+
Sbjct: 240 YELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVL 299
Query: 507 SGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 328
SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK
Sbjct: 300 SGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 359
Query: 327 EEYDESGPGIVHRKCF 280
+EYDESGP IVHRKCF
Sbjct: 360 QEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 274 bits (672), Expect = 4e-74
Identities = 125/136 (91%), Positives = 131/136 (96%)
Frame = -2
Query: 687 YELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANPVM 508
YELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYAN V+
Sbjct: 241 YELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVL 300
Query: 507 SGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 328
SGG+TMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK
Sbjct: 301 SGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 360
Query: 327 EEYDESGPGIVHRKCF 280
+EYDESGP IVHRKCF
Sbjct: 361 QEYDESGPSIVHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 272 bits (668), Expect = 1e-73
Identities = 124/136 (91%), Positives = 131/136 (96%)
Frame = -2
Query: 687 YELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANPVM 508
YELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYAN V+
Sbjct: 240 YELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVL 299
Query: 507 SGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 328
SGG+TM+PGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK
Sbjct: 300 SGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 359
Query: 327 EEYDESGPGIVHRKCF 280
+EYDESGP IVHRKCF
Sbjct: 360 QEYDESGPSIVHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 249 bits (609), Expect = 2e-66
Identities = 111/136 (81%), Positives = 126/136 (92%)
Frame = -2
Query: 687 YELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANPVM 508
YELPDGQVI+IGNERFRCPEA+FQP+FLGME+ GIHE +YN IMKCDVDIRKDLY+N V+
Sbjct: 14 YELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRKDLYSNCVL 73
Query: 507 SGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 328
SGG+TM+PGIADRMQKEI LA +++K+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K
Sbjct: 74 SGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAK 133
Query: 327 EEYDESGPGIVHRKCF 280
EEY E GP IVHRKCF
Sbjct: 134 EEYHEYGPPIVHRKCF 149
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 97.5 bits (232), Expect = 9e-21
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 29/156 (18%)
Frame = -2
Query: 687 YELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANPVM 508
Y LPDG+V+ + ERF PEALFQP + +E G+ E ++N+I D+D R + Y + V+
Sbjct: 244 YTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVL 303
Query: 507 SGGTTMYPGIADRMQKEITAL---------------------APSTI-----KIKI-IAP 409
SGG+TMYPG+ R+++EI L P T K KI I
Sbjct: 304 SGGSTMYPGLPSRLEREIKQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIED 363
Query: 408 P-ERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 307
P RK+ V++GG++LA + W++++EY+E G
Sbjct: 364 PPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 85.0 bits (201), Expect = 5e-17
Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 17/145 (11%)
Frame = -2
Query: 663 ITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANPVMSGGTTMY 487
+ + ERF PE F P F + + + E V N I C +D+R+ LY N V+SGG+TM+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMF 255
Query: 486 PGIADRMQKEIT----------------ALAPSTIKIKIIAPPERKYSVWIGGSILASLS 355
R+Q++I + P I+ ++I+ ++Y+VW GGS+LAS
Sbjct: 256 RDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWFGGSMLASTP 315
Query: 354 TFQQMWISKEEYDESGPGIVHRKCF 280
F + +K +YDE GP I F
Sbjct: 316 EFYSVCHTKADYDEHGPSICRHNPF 340
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 84.2 bits (199), Expect = 9e-17
Identities = 37/62 (59%), Positives = 47/62 (75%)
Frame = -2
Query: 687 YELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANPVM 508
Y LPDGQ I IG+ERFR E LFQPS LG + GIHE+++ SI KCD+D+R +L+ N V+
Sbjct: 2285 YMLPDGQSIRIGSERFRAAEPLFQPSLLGRDIDGIHESIFKSIKKCDIDLRAELFHNIVL 2344
Query: 507 SG 502
SG
Sbjct: 2345 SG 2346
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/85 (34%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = -2
Query: 603 GMESCGIHETVYNSIMKCDVDIRKDLYANPVMSGGTTMYPGIADRMQKEITALAPSTIKI 424
G + G+ + V S+ D+DIR L+ + +++GG T+ G +R+ +E+ + P ++++
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 423 KII---APPERKYSVWIGGSILASL 358
K+I + E++++ WIGGSILASL
Sbjct: 206 KLISNNSSVEKRFNPWIGGSILASL 230
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Frame = -2
Query: 597 ESCGIHETVYNSIMKCDVDIRKDLYANPVMSGGTTMYPGIADRMQKEITALAPST----- 433
E + + +S++ C +D RK L N V+ GGT M PG R+ +EI L S
Sbjct: 54 EEKSLATALLDSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDK 113
Query: 432 --IK-IKIIAPP-ERKYSVWIGGSILASLSTFQQMWISKEEYDE 313
IK +K+ PP + W+GG+I SL ++E Y +
Sbjct: 114 LFIKTVKMHQPPVNANITAWLGGAIFGSLEVLADRSTTRERYQQ 157
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = -2
Query: 585 IHETVYNSIMKCDVDIRKDLYANPVMSGGTTMYPG 481
I E + +I K D+D+R+ LY+N V+SGG+T++ G
Sbjct: 257 IIEVLAFAIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -2
Query: 687 YELPDGQVITIGNERFRCPEALFQPSFL 604
Y LPDGQ+I+IG E E LF+P L
Sbjct: 871 YTLPDGQMISIGYECISSMEPLFRPDLL 898
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -2
Query: 633 PEALFQPSFLGMESCGIHETV 571
PE +FQPS LG+E GI ET+
Sbjct: 3 PEIIFQPSMLGLEQAGITETM 23
>SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 522 ANPVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPE 403
ANPV+ + + +R+ KE+ L +K KIIAPPE
Sbjct: 44 ANPVIHPARKVPVSLGERLDKELNRLTELGIVKEKIIAPPE 84
>SB_20153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 522 ANPVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPE 403
ANPV+ + + +R+ KE+ L +K KIIAPPE
Sbjct: 44 ANPVIHPARKVPVSLGERLDKELNHLTELGIVKEKIIAPPE 84
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = -1
Query: 589 RHPRDRVQLHHEVRRRHP*GPVRQPRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRS 410
R P+DR + HH RR H + +H R H R++R+ +G+ L+ +D
Sbjct: 830 RPPQDRHRRHHHRRRHH---NNKHRKHSR-EHSRRRHQRKHHKGNDAQETLEEIFED--D 883
Query: 409 PREEVLRMDRWIHPG 365
R+E +D +++ G
Sbjct: 884 ARDEKENVDEFVNGG 898
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 592 VRHPRDRVQLHHEVRRRHP*GPVRQPRHVRWYHHVP-RYRRQDAEGDHRPRALDHQDQDH 416
V HPR V +H HP V PR +H + RQD DH + DH QD
Sbjct: 599 VVHPRRDV-VHPRRDVVHPRQDVVHPRQDVDHHRQDVDHHRQDV--DHHRQDADHHRQDV 655
Query: 415 RSPREEVL 392
PR++V+
Sbjct: 656 VHPRQDVV 663
Score = 29.1 bits (62), Expect = 3.5
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Frame = -1
Query: 592 VRHPRDRVQLHHEVRRRHP*GPVRQPRHVRWYHHV----PR----YRRQDAEGDHRPRAL 437
V HPR V HH H V R +H PR +RRQDA DHR +
Sbjct: 620 VVHPRQDVD-HHRQDVDHHRQDVDHHRQDADHHRQDVVHPRQDVVHRRQDA--DHRRQDA 676
Query: 436 DHQDQDHRSPREE 398
DH QD PR++
Sbjct: 677 DHHRQDVVHPRQD 689
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 371 MDPPIHTEYFLSGGAMILILMVEGARAVISFCILSAIPGYMV-VPPD 508
+DPP+ +Y L+GG ++ ++ FCI G++V PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCIFQ---GFVVPTPPE 801
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Frame = -1
Query: 589 RHPRDRVQLHHEVRRRHP*GPVRQPRHVRWYHHVPRYR--RQDAEGDHRPR--ALDHQDQ 422
RH R R + R RH RH H R++ R + R R H+
Sbjct: 23 RHERSRHETRQHERSRHKTSRHESSRHKTSRHERSRHKTSRHETSRHERSRHETRQHERS 82
Query: 421 DHRSPREEVLRMDRWIH 371
H++ R E R ++ H
Sbjct: 83 RHKTSRHETSRHEKSRH 99
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = -1
Query: 583 PRDRVQLHHEVRRRHP*GPVRQPRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHR 413
PRDR + E RRR P R+ R + Y PR RR+ R R D R
Sbjct: 854 PRDRRRRSPEHRRRREASPPRRDR--KRYDSPPRRRRRSPSPPPRRRRRDSYSPSRR 908
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/73 (24%), Positives = 27/73 (36%)
Frame = -1
Query: 589 RHPRDRVQLHHEVRRRHP*GPVRQPRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRS 410
RH R R + R RH RH H R++ E R+ H+ + H
Sbjct: 63 RHERSRHETRQHERSRHKTSRHESSRHKTSRHGRSRHKTSRHETSRHERS-RHETRQHER 121
Query: 409 PREEVLRMDRWIH 371
R + R ++ H
Sbjct: 122 SRHKTSRHEKSRH 134
>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
Length = 647
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/65 (23%), Positives = 32/65 (49%)
Frame = -1
Query: 592 VRHPRDRVQLHHEVRRRHP*GPVRQPRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHR 413
++HP ++ H + ++ P + + ++ HHVP + +A G+ R Q+ D+
Sbjct: 550 IQHPVEKAIQHAQEKKYQP---ELEKKTIK-SHHVPGQDKTEARGEERIAVWSTQNGDYY 605
Query: 412 SPREE 398
R+E
Sbjct: 606 DQRDE 610
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,960,059
Number of Sequences: 59808
Number of extensions: 402090
Number of successful extensions: 1429
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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