Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30049
(898 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 138 1e-33
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 89 8e-19
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 71 2e-13
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 65 1e-11
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 61 2e-10
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 56 5e-09
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 44 3e-05
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 39 0.001
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 38 0.003
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 31 0.29
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 29 0.68
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.68
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 28 2.1
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 28 2.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 28 2.1
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 27 3.6
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 4.8
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 6.3
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 8.4
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 26 8.4
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 26 8.4
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 8.4
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 138 bits (333), Expect = 1e-33
Identities = 85/262 (32%), Positives = 144/262 (54%), Gaps = 6/262 (2%)
Frame = +2
Query: 122 LSKANFETVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAKVDATQEQ 301
++K +I+ + ++V+FYAPWCGHCK+LAPEY AA +L E+ I L +VD T+E
Sbjct: 27 VNKEGLNELITADKVLMVKFYAPWCGHCKALAPEYESAADEL--EKDGISLVEVDCTEEG 84
Query: 302 DLAESYGVRGYPTLKFFRNGSPI-DYSGGRQADDIISWLKKKTGPPAVEVTSAEQAKELI 478
DL Y +RGYPTL F+NG I YSG R+ D ++ +++K+ P V+ S + + +
Sbjct: 85 DLCSEYSIRGYPTLNVFKNGKQISQYSGPRKHDALVKYMRKQL-LPTVKPISKDTLENFV 143
Query: 479 D-ANTVIVFGFFSDQSSTRAKTFLSTAQVV-DDQVFAIVSDEKVIKELEAEDEDVVLFKN 652
+ A+ + V FF DQ T+ A+V+ DD VFA D+++ K L + +V F
Sbjct: 144 EKADDLAVVAFFKDQKLN--DTYTEVAEVMKDDFVFAASDDKELAKSLGSNFPGIVAFTK 201
Query: 653 ---FEEKRVKYEDEEITEDLLNAWVFVQSMPTIVEFSHETASKIFGGKIKYHLLIFLSKK 823
+ ++ Y + + + ++ V S+P + E + T K + ++ + S +
Sbjct: 202 DAAQDSDKLVYTGDWDPASIAD-FIGVSSIPLLDELNQMTFGKYQQSGLPLGIIFYNSTE 260
Query: 824 NGDFEKYLEDLKPVAKTYRDRI 889
+ D E Y + +P+AK Y+D +
Sbjct: 261 SRD-ELY-DVFQPLAKKYQDTL 280
Score = 91.9 bits (218), Expect = 1e-19
Identities = 45/111 (40%), Positives = 75/111 (67%), Gaps = 4/111 (3%)
Frame = +2
Query: 101 TEENVLVLSKANFETVI-STTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLA 277
++E+++VL NF+ ++ T+ +LVEFYAPWCGHCK+LAP Y K A + + ++S + +A
Sbjct: 353 SQEDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYS-DDSNVVVA 411
Query: 278 KVDATQEQDLAESYGVRGYPTLKFFRNG---SPIDYSGGRQADDIISWLKK 421
K+DAT E D+ S + G+PT+ FF+ +P+ Y G R +D+ +++ K
Sbjct: 412 KIDAT-ENDI--SVSISGFPTIMFFKANDKVNPVRYEGDRTLEDLSAFIDK 459
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 89.0 bits (211), Expect = 8e-19
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Frame = +2
Query: 44 VLIFTAIALLGLALGDEVPTEENVLVLSKANFETVISTTEYILVEFYAPWCGHCKSLAPE 223
+L F AL L V +++ L T+ ++ + L+EFYA WCGHCKSLAP
Sbjct: 5 LLSFVIFALFALVFASGVVELQSLNELEN----TIRASKKGALIEFYATWCGHCKSLAPV 60
Query: 224 YAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF-RNGS-PIDYSGGRQAD 397
Y + L E+ + + + K+DA D+A+ Y + G+PTL +F +GS P+ YS R D
Sbjct: 61 YEELGA-LFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNARDVD 119
Query: 398 DIISWLKKKTGPPAVEVTSAEQAKELIDAN 487
+ ++ +KTG ++ EL N
Sbjct: 120 SLTQFVSEKTGIKKRKIVLPSNVVELDSLN 149
Score = 79.4 bits (187), Expect = 6e-16
Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Frame = +2
Query: 110 NVLVLSKANFETVISTTEY-ILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAKVD 286
NV+ L NF+ V+ + +LVEFYA WCG+CK LAP Y + K+ + E +++ K++
Sbjct: 141 NVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTY-ETLGKVFKNEPNVEIVKIN 199
Query: 287 ATQEQDLAESYGVRGYPTLKFF---RNGSPIDYSGGRQADDIISWLKKKTG 430
A D+ + V +PT+KFF P Y G R + +I ++ KK+G
Sbjct: 200 ADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKSG 250
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 70.9 bits (166), Expect = 2e-13
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Frame = +2
Query: 47 LIFTAIALLGLALGDEVPTEENVLVLSKANFETVISTTEYILVEFYAPWCGHCKSLAPEY 226
L +L+ G N + L+ NF + LV FYAPWCG+CK L P Y
Sbjct: 11 LFLACFSLVSGVFGYSPMFGSNTIELNSKNFRKFVKAKGPSLVVFYAPWCGYCKKLVPTY 70
Query: 227 AKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF---RNGSPI---DYSGGR 388
K A+ L P+ DA Q + + Y V+G+PT+K GS + DY+G R
Sbjct: 71 QKLASNL-HSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTDYNGDR 129
Query: 389 QADDIISWLKKKTGPPAVEVTSAE 460
+ ++ P V++ ++E
Sbjct: 130 SYKSLQKFVSDSI-PSKVKILTSE 152
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 65.3 bits (152), Expect = 1e-11
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Frame = +2
Query: 119 VLSKANFETVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAKVDATQE 298
+ S ++ + I + Y+ V+ YA WCG CK+++P +++ A+K A + AKV+ ++
Sbjct: 6 IRSYQHWISTIPKSGYLAVDCYADWCGPCKAISPLFSQLASKYASPK--FVFAKVNVDEQ 63
Query: 299 QDLAESYGVRGYPTLKFFRNGSPIDYSGGR--QA--DDIISWLKKKTGPPAVEVTSAEQA 466
+ +A GV+ PT FF NG ID G QA + + K TG A+ +S+
Sbjct: 64 RQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKVALISSKATGTGALASSSSAPV 123
Query: 467 K 469
K
Sbjct: 124 K 124
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 61.3 bits (142), Expect = 2e-10
Identities = 35/101 (34%), Positives = 49/101 (48%)
Frame = +2
Query: 119 VLSKANFETVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAKVDATQE 298
V S ++ T IS + +V+FYA WCG CK L P KL+E+ V+A +
Sbjct: 22 VESFGDYNTRISADKVTVVDFYADWCGPCKYLKP----FLEKLSEQNQKASFIAVNADKF 77
Query: 299 QDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKK 421
D+A+ GV PT+ FR G +D G + S L K
Sbjct: 78 SDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAK 118
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 56.4 bits (130), Expect = 5e-09
Identities = 24/85 (28%), Positives = 46/85 (54%)
Frame = +2
Query: 119 VLSKANFETVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAKVDATQE 298
V + F++++ + ++V+F+A WCG CK++AP++ + + S KVD Q
Sbjct: 5 VSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKF----EQFSNTYSDATFIKVDVDQL 60
Query: 299 QDLAESYGVRGYPTLKFFRNGSPID 373
++A GV P+ ++NG I+
Sbjct: 61 SEIAAEAGVHAMPSFFLYKNGEKIE 85
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 44.0 bits (99), Expect = 3e-05
Identities = 40/268 (14%), Positives = 108/268 (40%), Gaps = 6/268 (2%)
Frame = +2
Query: 98 PTEENVLVLSKANFETVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLA 277
PT + + A+ + ++ E ++FY+ C C ++ + A ++ + +A
Sbjct: 278 PTGTSKALALDADIDAALTDKEGWFIQFYSSECDDCDDVSTAWYAMANRM---RGKLNVA 334
Query: 278 KVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTGPPAVEVTSA 457
++ + + Y ++ +PT FF+ + ++Y G D++S+ ++ EV
Sbjct: 335 HINCAVSKRACKQYSIQYFPTFLFFKEEAFVEYVGLPNEGDLVSFAEEAANFEIREVELL 394
Query: 458 EQAKELIDANTVIVFGFFSDQSSTRAKTFLSTA-QVVDDQVFAIVSDEKVIKELEAEDED 634
+ + + ++ F+ D S+ T Q++ + + +++ K+
Sbjct: 395 DTVNAEKNGDVFFLY-FYDDDSAEYLNIIRKTGIQLLGHANLYLTTSQQIAKKYRVVSFP 453
Query: 635 VVLFKNFEEKRVKYEDEEITED-----LLNAWVFVQSMPTIVEFSHETASKIFGGKIKYH 799
++ + Y ++ +D + W+ +P + E + +IF +
Sbjct: 454 KLIV--VRDGIASYYPAKMAQDNKDYRRILGWMKNNWLPVLPELRTSNSKEIFNDESV-- 509
Query: 800 LLIFLSKKNGDFEKYLEDLKPVAKTYRD 883
+L L+ + DF++ + +A + D
Sbjct: 510 VLFLLNPELDDFDETKRTAQKIATEFLD 537
Score = 42.7 bits (96), Expect = 7e-05
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +2
Query: 122 LSKANFETVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAE--EESPIKLAKVDATQ 295
L+ + E+ +S + +++Y P CG CK L P + K E E S +VD ++
Sbjct: 31 LTDNDLESEVSKGTWF-IKYYLPSCGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSK 89
Query: 296 EQDLAESYGVRGYPTLKFFRNGSPID 373
E L+ +R PTL ++NG ++
Sbjct: 90 E--LSSCANIRAVPTLYLYQNGEIVE 113
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 38.7 bits (86), Expect = 0.001
Identities = 22/104 (21%), Positives = 43/104 (41%)
Frame = +2
Query: 161 EYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPT 340
+ IL+ FYAPW CK + + + A++ K++A + D+AES+ V P
Sbjct: 21 QIILLNFYAPWAAPCKQMNQVF----DQFAKDTKNAVFLKIEAEKFSDIAESFDVNAVPL 76
Query: 341 LKFFRNGSPIDYSGGRQADDIISWLKKKTGPPAVEVTSAEQAKE 472
+ G + + + + P +++S + E
Sbjct: 77 FVLIHGAKVLARISGANPQKLKAAIDEYIQPLISQISSTNASVE 120
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/87 (17%), Positives = 43/87 (49%)
Frame = +2
Query: 200 HCKSLAPEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYS 379
HC+ A ++ + +K+A+V+ +E+++ + ++ +PT + F+ I Y+
Sbjct: 208 HCEDCFHWEAVWSSITRNTDERLKMAQVNCDEEKEMCNHFHIKKFPTFRVFQGFDSIQYN 267
Query: 380 GGRQADDIISWLKKKTGPPAVEVTSAE 460
G + ++S+ + A+++ +
Sbjct: 268 GPLKYQQLLSYSNQVASYQAIKIEEGD 294
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +2
Query: 305 LAESYGVRGYPTLKFFRNGSPIDYSG--GRQADD---IISWLKKKTGPPAVEVT 451
LA YG + P++ RNG PI Y R+ D I W+ + P E+T
Sbjct: 343 LANKYGAQSQPSIIAVRNGMPIVYQAITPREFRDYKRITEWINIVSSPFITELT 396
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 30.7 bits (66), Expect = 0.29
Identities = 18/75 (24%), Positives = 40/75 (53%)
Frame = +2
Query: 641 LFKNFEEKRVKYEDEEITEDLLNAWVFVQSMPTIVEFSHETASKIFGGKIKYHLLIFLSK 820
+ +NF++ R ++ + +LLN+ +V+F SK+ +++ +F++
Sbjct: 631 IVENFKQLRCLLQENSDSLELLNSQCMADLSVQVVDFE---LSKL--QTVEFFNTLFMNT 685
Query: 821 KNGDFEKYLEDLKPV 865
KN DF +++L+PV
Sbjct: 686 KNLDFNAVIKNLEPV 700
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 0.68
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = +2
Query: 668 VKYEDEEITEDLLNAWVFVQSMPTIVEFSHETASKIFGGKIKYHLLIFLSKKNGDFEKYL 847
V+Y+++ D L+ W ++ + H+ + +F +K +L F + + + YL
Sbjct: 12 VEYQNDMKRYDTLHVWKLIKLLICKFLLFHDFGTALFTSLVKASMLGFHNWRR-TYWLYL 70
Query: 848 EDLKPVAKTY 877
+ L+P+ TY
Sbjct: 71 KKLRPINDTY 80
>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 318
Score = 29.5 bits (63), Expect = 0.68
Identities = 27/86 (31%), Positives = 40/86 (46%)
Frame = +2
Query: 200 HCKSLAPEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYS 379
+C L P +AA L + +SP L VDA + L S+GVR + G+ +
Sbjct: 183 YCAYLVPNEHEAAILLNQADSPATLENVDAYASKLL--SFGVRKAVIITLGSQGAYYKSA 240
Query: 380 GGRQADDIISWLKKKTGPPAVEVTSA 457
G A ++S K K AV+ T+A
Sbjct: 241 NGESA--LVSACKVK----AVDTTAA 260
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 27.9 bits (59), Expect = 2.1
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Frame = +2
Query: 188 PWCG-HCKSLAPEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGS 364
PW + ++L + + KL E + K D + L G++ Y ++ F N
Sbjct: 226 PWKNPNTENLTSQVSIKEPKLYEPHPTTAIKKADGKIIRILVIDVGMK-YNQIRCFLNRG 284
Query: 365 ------PIDYSGGRQADDIISWLKKKTGPPAVEVTSAEQAKELIDANTVIVFGF-FSDQS 523
P DY ++ D + ++ G P++ ++ K ++++ TV VFG F Q
Sbjct: 285 VELLVVPWDYDFTKETYDGL-FISNGPGDPSLMDLVVDRVKRVLESKTVPVFGICFGHQI 343
Query: 524 STRA 535
RA
Sbjct: 344 MARA 347
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 380 GGRQADDIISWLKKKTGPPAVEVTSAEQAKELIDANTVIVFGFFSD-QSSTRAKTFLSTA 556
GGR D + +K+G V E +E+ + + F S+ +S T K + T
Sbjct: 186 GGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTY 245
Query: 557 QVVDDQVFAI 586
Q+ D+Q +
Sbjct: 246 QLPDNQTITL 255
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 546 RKVLALVELWSEKKPNTITVLASISSLACSAEVTSTA 436
+K +L + W + + LASISS A SA + ST+
Sbjct: 673 KKAASLPQFWLSPRSHNTARLASISSFAKSAVMNSTS 709
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -1
Query: 469 FSLFSRGNLNSRGASLLLQPTDDVISLTTT*IVDRT 362
F S+GNL+ SLL +D+V +TTT +VD T
Sbjct: 304 FEFDSKGNLD---VSLLKSLSDEVNMITTTSLVDNT 336
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -2
Query: 855 KSSRYFSKSPFFLDKKIRRWYLIFPPKILEAVSCENSTIVGMLWTNTQAL 706
+ S + S D I W + P VSC +S + M W +T+ L
Sbjct: 280 RGSNQLASSSLVGDTAINVWDITRPYIPYRTVSCHDSIVSTMHWASTELL 329
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 291 VASTFASLIGDSSSASFVAALAYSGARDLQW 199
V++ F SL+G S FVA + R L+W
Sbjct: 1039 VSNIFKSLVGSMSCVEFVAEARETINRSLEW 1069
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 46 NTHCDIIGTFLL 11
NTHCDI+ +FLL
Sbjct: 275 NTHCDIVTSFLL 286
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 108 KMCSF*VKLTLKL*FQPRSTF*LNSMLHGAATANLWHRNTP 230
K +F L QP T N +L+ + NLW R+ P
Sbjct: 620 KSANFDFSFLKSLDLQPTITLGKNDLLNAILSQNLWFRSLP 660
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.8 bits (54), Expect = 8.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 769 QDLWWKDQIPPSYLLIQEKW 828
+ +WW QIP +L ++KW
Sbjct: 441 RQIWWGHQIPVWKILEEDKW 460
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 8.4
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 6/136 (4%)
Frame = +2
Query: 212 LAPEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQ 391
++P Y A A S + +T RG+PT + N +P Y
Sbjct: 271 VSPMYGSHAAPYASTPSAAVGSSRGSTPASATVPISPARGFPTTSAY-NPAPPAYGMANP 329
Query: 392 A---DDIISWLKKKTGP---PAVEVTSAEQAKELIDANTVIVFGFFSDQSSTRAKTFLST 553
A I S +G P++ TSA+ N + D+++T+A
Sbjct: 330 AYGSTGIRSSSIPSSGSIRSPSLTTTSAQATTNA--TNNITTTTAAQDENATKAALIAQL 387
Query: 554 AQVVDDQVFAIVSDEK 601
+ DDQ+ + D+K
Sbjct: 388 MALTDDQINVLPPDQK 403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,451,806
Number of Sequences: 5004
Number of extensions: 67805
Number of successful extensions: 257
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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