Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30046X
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 31 0.14
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 29 0.44
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 29 0.44
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 29 0.44
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 27 1.3
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 27 2.3
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 26 3.1
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 26 3.1
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 5.4
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 9.4
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 9.4
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 9.4
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 9.4
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 9.4
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = -2
Query: 453 PTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKV 274
PT KK + ++ K + ++ +E N + VK + L+ ++EK P W + +
Sbjct: 531 PTAKKNNSFKPKLFRRSRELSEKLCNNWSERVKSPSYQLKVREREKLPAWESRRKIMDAI 590
Query: 273 KEEEV 259
+ +V
Sbjct: 591 QHSQV 595
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 29.1 bits (62), Expect = 0.44
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 384 NFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 280
+FRNQ+K ++ L E+ KE W +G DQ
Sbjct: 1070 DFRNQIKSQTERILVLREKKKEDPISWMEGTMEDQ 1104
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 29.1 bits (62), Expect = 0.44
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 426 ENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQK--VKEEEVE 256
+N F K E NF + +K K +FT E+K + K P +QK +K+++ E
Sbjct: 254 DNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDE 312
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 29.1 bits (62), Expect = 0.44
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 354 KKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 256
KK+ ++D+ K D K K G K KEE +E
Sbjct: 83 KKDKPSADKDRISKKDKKKSKKGKSKTKEESIE 115
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 438 VSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEE-DKEKK 313
+ K +NK + Q+ + +N+ K+ ++KE EEE D EKK
Sbjct: 1 MGKIKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKK 43
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 360 VKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 256
++ E+ L++E+KE+K K + +K KE+E E
Sbjct: 275 IESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKE 309
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 402 KKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 280
KK + R +++ K ++DK KP+ GKP D+
Sbjct: 22 KKPLPLHMRTKIREHLNKSDPTVKDDKSAKPELPFGKPADR 62
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 26.2 bits (55), Expect = 3.1
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = -2
Query: 471 EANFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGK 292
EA KP K + K K + +F N L+ +++ +++ +DKEK
Sbjct: 28 EAAITKPPASKKKRKNRKKKKNNGPSEQFVGNNDLE--EQRSGSIDSKDKEK-------- 77
Query: 291 PGDQKVKEEE 262
P D+KVKE E
Sbjct: 78 PLDEKVKELE 87
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 523 KGKDMEISDLNSQVNDLRGKFRQAHTKEGFQIRKQIRQAPEEGR 392
K K+ + L +QV L+ + + T E Q+R+++RQ EE R
Sbjct: 95 KRKEDHLKALETQVVTLK-ELHSSTTLENDQLRQKVRQLEEELR 137
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 24.6 bits (51), Expect = 9.4
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -2
Query: 444 KKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEE 265
KK + E AKLQ K Q KK + ++ +K+ + D GK D+++ +E
Sbjct: 520 KKARQQEKDMAKLQNKLNMTGSEQQ----KKAKAKVKAMNKKLEKDKQSGKVLDEEIIQE 575
Query: 264 E 262
+
Sbjct: 576 K 576
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -2
Query: 447 LKKVSKYENKFAKLQKKAAEFNFRNQLKVVKK--KEFTLEEEDKEKKPDW 304
LK + + K QKK + N +K K K T+ +D +KPDW
Sbjct: 119 LKLLDSELKSWLKAQKKRSVPNGTQLVKNYNKISKPETVPPDDDPEKPDW 168
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 523 KGKDMEISDLNSQVNDLRGKFRQAHTKEG 437
+ + M ++ N ++N LRG H +EG
Sbjct: 293 RAQPMRLAAHNGEINTLRGNKNWMHAREG 321
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = -1
Query: 508 EISDLNSQVNDLRGKFRQAHTK 443
+I++LNSQ+++L+ K +A+ K
Sbjct: 588 KINELNSQIDELKLKLNEANKK 609
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 136 QAAR*IKFKSLCRQTHYRAHHII 204
Q A KF LC +THYR + I
Sbjct: 831 QDATRTKFGKLCTKTHYRKRYSI 853
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,241
Number of Sequences: 5004
Number of extensions: 37362
Number of successful extensions: 136
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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