Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30045
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 177 2e-45
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 143 2e-35
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 129 3e-31
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 128 5e-31
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 85 6e-18
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 30 0.26
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 0.78
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 28 1.0
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 28 1.4
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 27 3.2
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc... 27 3.2
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 26 5.5
SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me... 26 5.5
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 26 5.5
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 25 7.3
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 25 7.3
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 25 7.3
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom... 25 9.7
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 25 9.7
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 177 bits (430), Expect = 2e-45
Identities = 90/219 (41%), Positives = 136/219 (62%)
Frame = +2
Query: 2 DNSPRFGKFIRIHFGPSGKLAGADIETYLLEKARVISQQALERSYHIFYQMMSGSVNGLK 181
+NS RFGKFI++ F SG+++ A IE YLLEK+RV+ Q ER+YH+FYQ++SG+ LK
Sbjct: 224 NNSSRFGKFIKVEFSLSGEISNAAIEWYLLEKSRVVHQNEFERNYHVFYQLLSGADTALK 283
Query: 182 AICLLSNDVMDYNIVSQGKTVIPGVDDGEEMRITDQAFDILGFTQEEKDNVYKITAAVMH 361
LL+++ DY + +I GVDD EE + AF LGF +E +++ I + ++H
Sbjct: 284 NKLLLTDNCNDYRYLKDSVHIIDGVDDKEEFKTLLAAFKTLGFDDKENFDLFNILSIILH 343
Query: 362 MGCMKFKQRGREEQAEADGTEDGDKVAKLLGVDCADLYKNLLKPRIKVGNEFVTQGRNKD 541
MG + R A ++ DK+ LLGV +NL++PRIK G+E+V R++
Sbjct: 344 MGNIDV-GADRSGIARLLNPDEIDKLCHLLGVSPELFSQNLVRPRIKAGHEWVISARSQT 402
Query: 542 QVINSVGALCKGIFDRLFKWLVKKCNETLDTKQKRQHFI 658
QVI+S+ AL K I++R F WLVK+ N +L+ + +FI
Sbjct: 403 QVISSIEALAKAIYERNFGWLVKRLNTSLNHSNAQSYFI 441
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 143 bits (347), Expect = 2e-35
Identities = 74/209 (35%), Positives = 119/209 (56%)
Frame = +2
Query: 2 DNSPRFGKFIRIHFGPSGKLAGADIETYLLEKARVISQQALERSYHIFYQMMSGSVNGLK 181
+NS RFGKFIRI F +G + GA+++ YLLEK+RVI + ER+YH+FYQ++ G+ L
Sbjct: 236 NNSSRFGKFIRIEFSNNGSIVGANLDWYLLEKSRVIHPSSNERNYHVFYQLLRGADGSLL 295
Query: 182 AICLLSNDVMDYNIVSQGKTVIPGVDDGEEMRITDQAFDILGFTQEEKDNVYKITAAVMH 361
L V Y+ + G I GVDDG+E + LGF E +++ I A+++H
Sbjct: 296 ESLFLDRYVDHYSYLKNGLKHINGVDDGKEFQKLCFGLRTLGFDNNEIHSLFLIIASILH 355
Query: 362 MGCMKFKQRGREEQAEADGTEDGDKVAKLLGVDCADLYKNLLKPRIKVGNEFVTQGRNKD 541
+G ++ R QA D++ LL + L P+ K G E++ R ++
Sbjct: 356 IGNIEVAS-DRSGQARFPSLTQIDQLCHLLEIPVDGFVNAALHPKSKAGREWIVTARTRE 414
Query: 542 QVINSVGALCKGIFDRLFKWLVKKCNETL 628
QV++++ +L KG+++R F LVK+ N+T+
Sbjct: 415 QVVHTLQSLAKGLYERNFAHLVKRLNQTM 443
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 129 bits (312), Expect = 3e-31
Identities = 71/210 (33%), Positives = 121/210 (57%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 DNSPRFGKFIRIHFGPSGKLAGADIETYLLEKARVISQQALERSYHIFYQMMSGSVNGLK 181
DNS RFGK+I+I F + + GA I+TYLLE++R++ Q ER+YHIFYQ+++GS +
Sbjct: 230 DNSSRFGKYIQILFDGNATIIGAKIQTYLLERSRLVFQPNQERNYHIFYQILAGSSSEQL 289
Query: 182 AICLLSNDVMDYNIVSQGK-TVIPGVDDGEEMRITDQAFDILGFTQEEKDNVYKITAAVM 358
L + ++N + QG + I GV+D EE + T A +G + + ++ + AA++
Sbjct: 290 EKWKLVENSQEFNYLKQGNCSTIEGVNDKEEFKATVDALKTVGIDNDTCECIFSLLAALL 349
Query: 359 HMGCMKFKQRGREEQAEADGTEDGDKVAKLLGVDCADLYKNLLKPRIKVGNEFVTQGRNK 538
H+G ++ K + ++ E+ LLGVD + L K L K +IK+ +E + + N+
Sbjct: 350 HIGNIEVKHSRNDAYIDSK-NENLINATSLLGVDPSSLVKWLTKRKIKMASEGILKPLNE 408
Query: 539 DQVINSVGALCKGIFDRLFKWLVKKCNETL 628
Q + + ++ K ++ LF WLV N+ L
Sbjct: 409 FQAVVARDSVAKFLYASLFDWLVATINKAL 438
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 128 bits (310), Expect = 5e-31
Identities = 74/217 (34%), Positives = 122/217 (56%), Gaps = 2/217 (0%)
Frame = +2
Query: 2 DNSPRFGKFIRIHFGPSGKLAGADIETYLLEKARVISQQALERSYHIFYQMMSGSVNGLK 181
DNS RFGK++ I F + + GA++ TYLLE++RV+S ER+YHIFYQ+++G +
Sbjct: 215 DNSSRFGKYVTISFDENLLITGANVNTYLLERSRVVSLLKGERNYHIFYQLITGCTEEQR 274
Query: 182 AICLLSNDVMDYNIVSQGK-TVIPGVDDGEEMRITDQAFDILGFTQEEKDNVYKITAAVM 358
L + +N +SQG I GVDD + IT +A +G ++ +++V+ + AA++
Sbjct: 275 DKWFLES-ASSFNYLSQGNCDEISGVDDSNDFTITCRALSTIGISESRQEDVFCLLAALL 333
Query: 359 HMGCMKFKQRGREEQAEADGTEDGDKVAKLLGVDCADLYKNLLKPRIKVGNEFVTQGRNK 538
H+G ++ E Q + G K A LLGVD + L K ++K ++K +E +
Sbjct: 334 HLGNIEVCATRNEAQIQ-PGDGYLQKAALLLGVDSSTLAKWIVKRQLKTRSETIITSSTL 392
Query: 539 DQVINSVGALCKGIFDRLFKWLVKKCNETLD-TKQKR 646
+ I+ ++ K ++ LF W+V N +LD K KR
Sbjct: 393 EHAISIRDSVAKYLYSALFLWIVHMINASLDHNKVKR 429
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 85.4 bits (202), Expect = 6e-18
Identities = 58/218 (26%), Positives = 108/218 (49%), Gaps = 7/218 (3%)
Frame = +2
Query: 2 DNSPRFGKFIRIHFGPSGKLAGADIETYLLEKARVISQQALERSYHIFYQMMSGSVNGLK 181
+NS R GK++ + F G GA I YLLEK R+++Q ER++HIFYQ + +
Sbjct: 187 NNSSRHGKYLEMIFNSGGVPVGAKITNYLLEKNRIVNQVRNERNFHIFYQFTKSAPQKYR 246
Query: 182 AICLLSNDVMDYNIVSQGKTV-IPGVDDGEEMRITDQAFDILGFTQEEKDNVYKITAAVM 358
+ +Y S + + + G+ D ++ + T A ++G T+ E+D ++++ + ++
Sbjct: 247 DTYGIQGP-ENYVYTSACQCLSVDGISDEKDFQGTMNAMKVIGITEPEQDEIFRMLSIIL 305
Query: 359 HMGCMKFKQRGREEQAEADGTEDGDKVAKLLGVDCADLYKNLLKPRIKVGNEFVTQGR-- 532
+G ++F Q G++ + + + L+GV A + + L RI +G
Sbjct: 306 WLGNIQF-QEGQDGGSVISDKSITEFLGYLIGVPVAAI-ERALTIRIMQTQHGARRGSVY 363
Query: 533 ----NKDQVINSVGALCKGIFDRLFKWLVKKCNETLDT 634
N Q + AL I++ LF W+V++ N+ L T
Sbjct: 364 EVPLNPTQALAVRDALSMAIYNCLFDWIVERVNKALVT 401
>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 351
Score = 30.3 bits (65), Expect = 0.26
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 155 MSGSVNGLKAICLLSNDVMDYNIVSQGK----TVIPGVDDGEEMRITDQAFDILGFTQEE 322
+SG +N L+ +C +D Y+I G +V P D GEE T ++ I+ +E
Sbjct: 215 ISGELNMLRGVCTRIDDDNRYDIEQAGSCFGMSVFPTSDSGEESFTTLESDPIVNCEHDE 274
Query: 323 K 325
K
Sbjct: 275 K 275
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 28.7 bits (61), Expect = 0.78
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 194 LSNDVMDYNIVSQGKTVIPGVDDGEEMRITDQAFDILGFTQEEKDNVY 337
L ++ +DY S+ + V DDGE++ D+ D E+ DN +
Sbjct: 333 LEDEDIDYTYDSEAEWVADEEDDGEDLESEDEEVDNSDDIVEDGDNAF 380
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 28.3 bits (60), Expect = 1.0
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +2
Query: 392 REEQAEADGTEDGDKVAKLLGVDCADL-YKNLLKPRIKVGNEFVTQGRNKDQVINSVGAL 568
+EE ++D DKV GV+C+ Y NL + + QGR NS L
Sbjct: 177 KEEDEKSDKVPRVDKVCFTCGVNCSQTWYHNLKNKKYDICPNCYKQGRFSSS-FNSSDFL 235
Query: 569 CKGIFD 586
C D
Sbjct: 236 CMDAID 241
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -3
Query: 187 DGFKTVDGAGHHLVEDVVRTLKSLLGDDTSL----LKQIGFDVSTSQFSGWTEMDT 32
D FK VDG+ L + TL S+L + S+ KQ+GF S+F ++ DT
Sbjct: 1048 DNFKLVDGSITALQRKNLYTLSSILSEIFSIESCDSKQLGFFRPLSEFIEVSKQDT 1103
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 630 SRVSLHFLTSHLKRRSKIPLQRAPTELM 547
S + LH+ +H+ +RSK P +R E++
Sbjct: 571 SSIYLHYFATHISKRSKKPGKRLEDEVV 598
>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 642 FCLVSRVSLHFLTSHLKRRSKIPLQRAPTELMTW-SLLRPWVTN 514
F ++ V L + L R IPL+ +P+E +W R W TN
Sbjct: 59 FAVLDHVYSWTLQNSLLTRISIPLESSPSEPHSWIYATRNWQTN 102
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 25.8 bits (54), Expect = 5.5
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Frame = +2
Query: 329 NVYKITAAVMHMGCMKFKQR---------GREEQAEADGTEDGDKVAKLLGVDCADLY-K 478
N K+TA V H GC+ F GR+ +A+ D KV K+ GV + L+ +
Sbjct: 77 NGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHE 136
Query: 479 NLLKPR 496
KPR
Sbjct: 137 KKEKPR 142
>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
RNA-mediated gene silencing |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 75 MSAPASFPDGPKWIRMNLP 19
+S P DGPKW+ + LP
Sbjct: 156 VSPPVLIDDGPKWLVIQLP 174
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 25.8 bits (54), Expect = 5.5
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Frame = +2
Query: 329 NVYKITAAVMHMGCMKFKQR---------GREEQAEADGTEDGDKVAKLLGVDCADLY-K 478
N K+TA V H GC+ F GR+ +A+ D KV K+ GV + L+ +
Sbjct: 77 NGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHE 136
Query: 479 NLLKPR 496
KPR
Sbjct: 137 KKEKPR 142
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 215 YNIVSQGKT-VIPGVDDGEEMRITDQAFDILGFTQEEKDNVYKITAAV 355
Y I +GK IPG++ G+ + I + A G+T+++ D K T +V
Sbjct: 240 YRIGFRGKADEIPGMEAGDIIVILEAAGGDYGWTRKDNDLYRKETISV 287
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 488 KPRIKVGNEF--VTQGRNKDQVINSVGALCKGIFDRLFKWLVKKCNETLD 631
K R+K G F +++ R K + N V +FDR F CN+ D
Sbjct: 38 KERLKRGKRFNNISKERTKGKGGNPVFNFSTYLFDRQFSQYPYSCNDDRD 87
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 572 KGIFDRLFKWLVKKCNETLDTKQKR 646
K +FD+ W +KCN+ D Q R
Sbjct: 484 KKVFDQGGSWRCEKCNKEYDAPQYR 508
>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 347
Score = 25.0 bits (52), Expect = 9.7
Identities = 25/105 (23%), Positives = 43/105 (40%)
Frame = +2
Query: 122 LERSYHIFYQMMSGSVNGLKAICLLSNDVMDYNIVSQGKTVIPGVDDGEEMRITDQAFDI 301
LE+ HI G + L + S + +DY +++ + + + + D A +
Sbjct: 29 LEKGLHIPNPAELGPYDVLVEVVATSINPLDYKLMNTYQMIAKALFKLPNIPGYDFAGRV 88
Query: 302 LGFTQEEKDNVYKITAAVMHMGCMKFKQRGREEQAEADGTEDGDK 436
L E K+ + T V GC F + GR+ + A GDK
Sbjct: 89 LAVGSEVKE--FSATQRVW--GCQSFPRAGRQGGSCATHIVTGDK 129
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 126 SRACWEMTRAFSSR*VSMSAPAS 58
+RA WEMT + + VS SA AS
Sbjct: 78 TRAVWEMTDPYKTLGVSKSASAS 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,931
Number of Sequences: 5004
Number of extensions: 47695
Number of successful extensions: 181
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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