Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30044X
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             184   5e-49
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.53 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.92 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   8.6  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  184 bits (448), Expect = 5e-49
 Identities = 85/92 (92%), Positives = 89/92 (96%)
 Frame = -1

Query: 564 LGMESCGIHETVXNSIMKCDVDIRKDLYANAVMSGGTTMYPGIADRMQKEITALAPSTIK 385
           LGME+CGIHET  NSIMKCDVDIRKDLYAN V+SGGTTMYPGIADRMQKEITALAPST+K
Sbjct: 42  LGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMK 101

Query: 384 IKIIAPPERKYSVWIGGSILASLSTFQQMWIS 289
           IKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 102 IKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -1

Query: 525 NSIMKCDVDIRKDLYANAVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSV 346
           N  +K D DI++  Y + V      MYP  +  M+K I+    +  KI I  P E K  +
Sbjct: 342 NKELKYD-DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK--I 396

Query: 345 WI 340
           WI
Sbjct: 397 WI 398


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -3

Query: 484 VRQRRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRM 344
           +++  H++ +HH    +    +  HRP     Q Q  +  R+E  R+
Sbjct: 138 LQRHHHLQNHHH--HLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRL 182


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 115 DGVRLDVQFSGITRYNVLTVAFRTRTSTTPHSTGVT--RPRCLEALAVDDAGAGLVVFL 285
           D  +LD  F   T+ N + ++ R++ STT    G T  +   + AL +D        FL
Sbjct: 354 DSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTPAQKARMRALNIDRVSRVFFPFL 412


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = -3

Query: 541 PRDRXQLHHEVRRRHP*GPVRQRRH---VRWYHHVPRYRRQDAEGDHRPRALDHQDQDHR 371
           P    Q+HH++  +HP    +Q +H    +  H     +    +   + +A   Q Q   
Sbjct: 162 PLVESQMHHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGM 221

Query: 370 SPREE 356
            PR++
Sbjct: 222 HPRQQ 226


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 484 QVLTDVYVALHDGVVH 531
           Q+L  V+   H+GVVH
Sbjct: 17  QILESVHHCHHNGVVH 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,638
Number of Sequences: 438
Number of extensions: 2893
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)