Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30043X
(329 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 109 8e-26
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 2e-08
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 52 2e-08
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 51 5e-08
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 3e-04
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 38 5e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.32
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 1.7
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 2.2
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 24 5.2
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 24 5.2
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 24 6.8
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy... 24 6.8
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 24 6.8
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 23 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 109 bits (263), Expect = 8e-26
Identities = 49/57 (85%), Positives = 55/57 (96%)
Frame = -2
Query: 322 ALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 152
ALAPS++K+KI+AP ERK SVWIGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 319 ALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 52.4 bits (120), Expect = 2e-08
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -2
Query: 280 SERKDSVWIGGSILASLSTFQQMWISKEEYDESG 179
S ++VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 385 SATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 52.0 bits (119), Expect = 2e-08
Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 3/44 (6%)
Frame = -2
Query: 277 ERKDSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 155
ER + W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 389 ERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 50.8 bits (116), Expect = 5e-08
Identities = 24/57 (42%), Positives = 39/57 (68%)
Frame = -2
Query: 322 ALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 152
A++ ++KI A ER + W+GGSILASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 324 AISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 38.3 bits (85), Expect = 3e-04
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -2
Query: 304 IKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 161
+ + +I+ ++++VW GGS+LA F +K +Y+E G I R
Sbjct: 372 VDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 37.5 bits (83), Expect = 5e-04
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = -2
Query: 301 KIKIIAPSERKDSVWIGGSILAS-LSTFQQMWISKEEYDESG 179
K+KI R+ +V+IGG++LA ++ MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 28.3 bits (60), Expect = 0.32
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -2
Query: 271 KDSVWIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 158
++ ++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 482 EELAFLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 1.7
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -2
Query: 325 SALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGP 176
+++ P I + S W G S + F+ +++EEY E GP
Sbjct: 659 TSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 2.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 96 ELGRAQHHTAPGSRGRAA*KHLRWT 170
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 24.2 bits (50), Expect = 5.2
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Frame = -1
Query: 311 LDHQDQDHSSLREKGLRMDRWI--------HPGIPVHLPADV 210
LD Q++ S+++E+G +D W+ H I HLP +
Sbjct: 318 LDEQEELESNVKEEGTMVDVWMQLCTYIDSHNPIQFHLPHSI 359
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 24.2 bits (50), Expect = 5.2
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 84 RLRSELGRAQH-HTAPGSRGRAA*KHL 161
R R + GR + HTAP RGR H+
Sbjct: 95 RGRGQRGRGNYGHTAPNRRGRGRGGHM 121
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 308 DHQDQDHSSLREKGLRMDRWIHPGIPVHLP 219
D D+ +L E LRM R++ PG+ P
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPGVEPGTP 528
>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 23.8 bits (49), Expect = 6.8
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 185 LVVFLLRDPHLLEGGQG-CQDGSTDP 259
LVV LR H+LEG + C+ + DP
Sbjct: 348 LVVMQLRGQHILEGLKDICRQDALDP 373
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 23.8 bits (49), Expect = 6.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 238 PGWIHRSIRSPFSRREL 288
PGW H SI +S+R L
Sbjct: 196 PGWAHHSIFLDWSKRNL 212
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 23.4 bits (48), Expect = 9.0
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +2
Query: 56 SGITRYNVLTVAFRTRTSTTPHSTGVTRPR---CLEALAVDDAGAGL 187
+ I YN+++ + T S T + G RP+ C DD+ G+
Sbjct: 185 AAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGI 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,227,772
Number of Sequences: 5004
Number of extensions: 20999
Number of successful extensions: 47
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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