Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30039X
(421 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 104 2e-23
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 104 2e-23
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 104 2e-23
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 104 2e-23
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 104 2e-23
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 104 2e-23
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 104 2e-23
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 104 2e-23
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 104 2e-23
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 103 7e-23
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 99 1e-21
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 66 7e-12
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 56 1e-08
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 47 5e-06
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 37 0.005
AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical ... 29 1.8
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 27 4.1
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 26 9.5
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 104 bits (250), Expect = 2e-23
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
ALAPS+ KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 104 bits (250), Expect = 2e-23
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
ALAPS+ KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 104 bits (250), Expect = 2e-23
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
ALAPS+ KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 104 bits (250), Expect = 2e-23
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
ALAPS+ KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 104 bits (250), Expect = 2e-23
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
ALAPS+ KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 104 bits (250), Expect = 2e-23
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
ALAPS+ KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 104 bits (250), Expect = 2e-23
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
ALAPS+ KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 276 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 332
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 104 bits (250), Expect = 2e-23
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
ALAPS+ KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 306 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 362
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 104 bits (250), Expect = 2e-23
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
ALAPS+ KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 103 bits (246), Expect = 7e-23
Identities = 48/56 (85%), Positives = 52/56 (92%)
Frame = -3
Query: 416 LAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
LAPS+ KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 320 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 98.7 bits (235), Expect = 1e-21
Identities = 48/57 (84%), Positives = 52/57 (91%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
ALAP+ KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 320 ALAPTM-KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 66.5 bits (155), Expect = 7e-12
Identities = 31/56 (55%), Positives = 39/56 (69%), Gaps = 3/56 (5%)
Frame = -3
Query: 410 PSSTKIKIIAPP---DRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKC 252
P + K+++ A P +RK+ IGGSIL SL TFQQMW+SK E DESG IV +KC
Sbjct: 380 PPTIKLRVFAAPTQAERKYGAWIGGSILGSLGTFQQMWVSKAEYDESGKSIVEKKC 435
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 56.0 bits (129), Expect = 1e-08
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = -3
Query: 416 LAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
+AP+ KI+I A +R IGGSI+ASL TF++MW+ K+E ++ G +H++ F
Sbjct: 319 IAPADGKIRISASQERNSLTWIGGSIVASLDTFRKMWLGKKEYEDMGASAMHKRFF 374
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 47.2 bits (107), Expect = 5e-06
Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Frame = -3
Query: 398 KIKIIAPPDRKHSVRIGGSILASL--STFQQMWISKEESDESG 276
KI+I APP RKH V +GG++LA+L Q W+SK+E +E G
Sbjct: 341 KIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 37.1 bits (82), Expect = 0.005
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = -3
Query: 416 LAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGI 267
L P +++I+ ++++V GGS+LAS S F Q+ +K E E GP I
Sbjct: 365 LKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414
>AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical
protein Y52B11A.9 protein.
Length = 404
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 374 DRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKC-F*AARPRDPGA 219
DRK V+ G A +S F + KE+ DE GP RK +R R P A
Sbjct: 213 DRKLDVK-SGVASAKISIFDMPKVKKEDPDEPGPSQPSRKSGKKRSRSRSPAA 264
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 321 GGQGSQDGSTDPYGVLP 371
GG + +GSTDPY V+P
Sbjct: 8 GGGSTGNGSTDPYAVIP 24
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +3
Query: 129 GVRLDV--QFSGITRYNV-LTVAFRTRTSTTPHSTGVTRPRCLEALAVDDAGAGLVGFLL 299
G R D+ ++ + +++V VA R+R S + V RP + + G + G L
Sbjct: 555 GRRQDIRQEWENLRKHDVCFLVACRSRKSASGLKFDVRRPFSEQIEVLSVRGCDVEGMLD 614
Query: 300 RDPHLLE 320
+D HLLE
Sbjct: 615 QDGHLLE 621
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,542,959
Number of Sequences: 27780
Number of extensions: 152157
Number of successful extensions: 383
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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