Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30038X
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    27   0.93 
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    27   1.2  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    27   1.6  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    27   1.6  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   3.8  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   5.0  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   5.0  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    24   8.7  

>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 220 SGSPSPAIDGLLSCLGAGF 164
           S SPSP IDG  + +G GF
Sbjct: 80  SSSPSPKIDGTAASIGMGF 98


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 174 PK-QESRPSIAGEGDPEFIKRQDQKRSDLDEQLKEYI 281
           PK Q  RP I+ +   E  K  D+K++  +E+++E I
Sbjct: 143 PKSQRKRPKISFDSVAELAKESDEKQNAYEEKIEERI 179


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +1

Query: 310 RRMSSNA----LKRSRPSARFSRAEEEKRLAQKKKGR 408
           RR   NA    L R R    F+RAEEE RLA++K+ R
Sbjct: 264 RRQQDNAYQASLARDRERQAFARAEEE-RLAKEKEER 299


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 238 TRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSRP--SARFSRAEEEKRLAQKKKGRR 411
           T S   + N+  + S + +   PR +      KR+ P      SRA + +R  + +K RR
Sbjct: 42  TLSSNAFKNNSSSISPSSSAKDPREQR-----KRTFPLNDTHSSRARQHERPFRSRKSRR 96

Query: 412 RKGECA 429
           RKG+ A
Sbjct: 97  RKGKKA 102


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 99  CWLFIECRTGRSRSLSHSALVLGPAAQRRWNV 4
           CW  I    G S  L+  AL+L PA+    NV
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNV 323


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 219 EFIKRQDQKRSDLDEQLKEY 278
           E +KR+DQK+ D+ E L+EY
Sbjct: 272 ELLKRRDQKQQDV-EALQEY 290


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 92  CLLSVARVEVGHSVTRHWFLDRQH 21
           C L +  +   +++ R W L R+H
Sbjct: 80  CCLQILGIATSYTILRSWLLSRKH 103


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 286 NGANSGPRRRMSSNALKRSRPSARFSRAEEEKRLAQKKKGRRRKGECA 429
           N   +  + + SSN   RS     FSR    +  ++ KKG + K E A
Sbjct: 409 NTVQNESKSQKSSNKEGRSSRGGFFSRLSFSRSSSRMKKGSKAKHEDA 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,241,901
Number of Sequences: 5004
Number of extensions: 18291
Number of successful extensions: 83
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)