Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30036
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   6.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
 Frame = -2

Query: 464 IVEEDAEAMQKELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXL--IQEIDT 291
           ++ +D  + +  +   F  YD+  NG +    L +                   I   DT
Sbjct: 226 LMSQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDT 285

Query: 290 DGSGTVDFDEF 258
           DG G ++ +EF
Sbjct: 286 DGDGKLNVNEF 296


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 418 RSDCTTRKATVTFPRRACARSSGNWT 341
           +S CT       F ++ C    G+WT
Sbjct: 148 QSSCTIDVTYFPFDQQTCIMKFGSWT 173


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 503 WNSPEFVTLAAKFIVEED 450
           WN+P  V  AAK I+ +D
Sbjct: 465 WNAPLNVQRAAKCIIGKD 482


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 40  TPDQLRTINYSLYNTYIILEKLADRY 117
           +PD+   + Y LYN  +I  + + +Y
Sbjct: 417 SPDRTSPMEYRLYNPALIQSQPSPQY 442


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 322 NSMASSKRSTLTEAAPSTSTS 260
           NS ASS R     A  STSTS
Sbjct: 821 NSPASSPRYLSAAATSSTSTS 841


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,491
Number of Sequences: 438
Number of extensions: 2308
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)