Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30035
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    28   1.3  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.3  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    27   2.2  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    27   2.9  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   5.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   5.1  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   8.9  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 350 TSRYRPHIRIQFSSLGYLSYARIEAFLAQRSSLTSXANLKR 472
           +SR+   I+++FS  G +S A IE +L ++S +      +R
Sbjct: 226 SSRFGKFIKVEFSLSGEISNAAIEWYLLEKSRVVHQNEFER 266


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 290 ASPSKKSDH--LPSRTSAMRDFTSRYRPHIRIQFSSLGYLSY-ARIEAFLAQRSS 445
           A+P +K+ H  L    + + DFT   +PHIR   S + Y S  +R+  +  ++++
Sbjct: 43  AAPRQKTLHSFLKKDNANIHDFTKVEKPHIRSSKSKVSYNSITSRVTKYFEEKNN 97


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 85  VYYFYMNRVRGPVALLF 135
           +YYFY+N+V+G   LLF
Sbjct: 201 LYYFYINKVQGRDGLLF 217


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 379 NSNVWPITRRKISHR*SP 326
           NS+ WPIT R + HR  P
Sbjct: 124 NSSAWPITIRNLIHRHQP 141


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -3

Query: 192 RS*AEARSRQADSRRLMTTKKQSYWPADPVHVEIVDSEV---ERRATCSALPP 43
           RS AEA  +  +S + +T  KQ+      +H+EI + +V   E R   +A  P
Sbjct: 156 RSIAEAEKKYVESAQKITLLKQALKRYHDLHIEIDEEDVPSTESRGNLNARRP 208


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +2

Query: 350 TSRYRPHIRIQFSSLGYLSYARIEAFLAQRSSLTSXANLKR 472
           +SR+   IRI+FS+ G +  A ++ +L ++S +   ++ +R
Sbjct: 238 SSRFGKFIRIEFSNNGSIVGANLDWYLLEKSRVIHPSSNER 278


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 595 IQSGLHPVPSRYC*SHRHRNVTHHLDIR*VIEPSCSGGLPSPL 467
           ++S  HP   +Y  S   R  T H  I   +    S  LPSP+
Sbjct: 427 VRSTSHPSRQQYIGSSNSRFNTRHQTISTPVSGRASNDLPSPV 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,070
Number of Sequences: 5004
Number of extensions: 44034
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)