Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30035
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 29 3.0
11_04_0312 - 16259612-16260231,16260264-16262796 28 6.9
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 28 6.9
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 28 6.9
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 27 9.2
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 27 9.2
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 27 9.2
02_05_0856 - 32272757-32273494,32273578-32273866,32273961-322743... 27 9.2
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773... 27 9.2
>10_07_0081 -
12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 344 DFTSRYRPHIRIQFSSLGYLSYARIEAFLAQRSSLTSXANLKR 472
D +SR+ + IQF G +S A + +L +RS + + +R
Sbjct: 209 DNSSRFGKFVEIQFDKSGRISGAAVRTYLLERSRVVQISESER 251
>11_04_0312 - 16259612-16260231,16260264-16262796
Length = 1050
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +2
Query: 239 VSDLRVQAKRY*DRWEGASPSKKSDHLPSRTSAMRDFTSRYRPHIRIQFSSLGYLSYARI 418
V ++ QAK +G +P++ H T R P R+Q +L AR
Sbjct: 97 VEEIATQAKDLVVECKGKNPARHDLHDADATQKARKKIEVMNPIRRLQIGALAIKLLARA 156
Query: 419 EAFLAQRSSL 448
E L R+ L
Sbjct: 157 EELLKHRNDL 166
>03_05_1124 +
30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 350 TSRYRPHIRIQFSSLGYLSYARIEAFLAQRSSLTSXANLKR 472
+SR+ + IQF G +S A + +L +RS + ++ +R
Sbjct: 532 SSRFGKFVEIQFDKYGKISGAAVRTYLLERSRVCQVSDPER 572
>02_04_0157 +
20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 299 SKKSDHLPSRTSAMRDFTSRYRPHIRIQFSSLGYLSYARIEAFLAQRSSLTSXANLKR 472
+ S ++ S S + SR+ + IQF G +S A I +L +RS + ++ +R
Sbjct: 209 NNNSSYMSSHISFVSQ-CSRFGKFVEIQFDQSGKISGAAIRTYLLERSRVCQISDPER 265
>06_03_0092 +
16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 350 TSRYRPHIRIQFSSLGYLSYARIEAFLAQRSSLTSXANLKR 472
+SR+ + IQF G +S A + +L +RS + ++ +R
Sbjct: 753 SSRFGKFVEIQFDKQGRISGAAVRTYLLERSRVCQISDPER 793
>03_06_0766 -
36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 350 TSRYRPHIRIQFSSLGYLSYARIEAFLAQRSSLTSXANLKR 472
+SR+ + IQF G +S A I +L +RS + ++ +R
Sbjct: 212 SSRFGKFVEIQFDDNGKISGAAIRTYLLERSRVCQISDPER 252
>03_05_0728 -
27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 275 DRWEGASPSKKSDHLPSRTSAMRDFT-SRYRPHIRIQFSSLGYLSYARIEAFLAQRS 442
++++GA + S H+ A+ D SR+ + IQF G +S A I +L +RS
Sbjct: 163 EQYKGADFGELSPHV----FAVADVAYSRFGKFVEIQFDKTGRISGAAIRTYLLERS 215
>02_05_0856 -
32272757-32273494,32273578-32273866,32273961-32274312,
32275232-32275850
Length = 665
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 135 KKQSYWPADPVHVEIVDSEVERRATCSALPPVTPMDLI 22
K + W D + +E+ SEVE+R L P DLI
Sbjct: 410 KTRMMWLIDELGMEVFWSEVEKRMPNGVLERAAPEDLI 447
>02_03_0407 -
18675368-18675378,18676047-18676977,18677323-18677376,
18677809-18678039,18678112-18678319,18678405-18678433,
18678638-18678706,18678832-18678893,18679056-18679133,
18679243-18679315,18681135-18681260
Length = 623
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 287 GASPSKKSDHLPSRTSAMRDFTSRYRPHIRIQFSS 391
G P ++DH PS T A +PH+R SS
Sbjct: 445 GGKPFSQADHRPSPTMAYPGAMPAAKPHVRHASSS 479
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,988,024
Number of Sequences: 37544
Number of extensions: 317729
Number of successful extensions: 791
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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