Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30034
(942 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 40 7e-04
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 37 0.004
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 35 0.019
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 35 0.019
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 34 0.033
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 32 0.10
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 31 0.24
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 30 0.41
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.41
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 30 0.54
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 29 0.72
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 29 0.72
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 28 1.7
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 2.2
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 28 2.2
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.9
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 2.9
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 3.8
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 3.8
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 27 5.1
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 5.1
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 6.7
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 6.7
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 6.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.7
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 8.8
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 26 8.8
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 8.8
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 8.8
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 8.8
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 39.5 bits (88), Expect = 7e-04
Identities = 40/150 (26%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Frame = +1
Query: 457 EEAEKKRQA-MLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSI 633
E+ ++RQA +L+ +++ +K ++K E + +R+K K+QL+ K+
Sbjct: 562 EKVAQQRQAKLLEEIEEENKRKQERELKKIREK------EKKRDK-KKQLKLAKEEERQR 614
Query: 634 RIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRH 813
R E + L K QE E K E ++ E+ +K+Q+ + ++ +E+QKQ+ R
Sbjct: 615 REAERLAEQAAQKALEAKRQE--EARKKREEQRLKREQEKKQQELERQKREEKQKQKERE 672
Query: 814 KALKKGLDPEALTGKHPPKIQVASKYERRV 903
K LKK EA K + ++ + E+R+
Sbjct: 673 KKLKK-QQQEADREKMAREQRLREEEEKRI 701
Score = 27.5 bits (58), Expect = 2.9
Identities = 27/136 (19%), Positives = 63/136 (46%)
Frame = +1
Query: 430 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 609
+IEE+ +R +E E K+ + +D K + K+ E +L ++ LE
Sbjct: 575 EIEEENKRKQERELKKIREKEKKRDKKK---QLKLAKEEERQRREAERLAEQAAQKALEA 631
Query: 610 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKE 789
+++ + + ++ + +K QEL + + ++ + E++ K+Q + K
Sbjct: 632 KRQEEARKKREEQRLKR----EQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKM 687
Query: 790 RQKQQLRHKALKKGLD 837
++Q+LR + K+ L+
Sbjct: 688 AREQRLREEEEKRILE 703
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 37.1 bits (82), Expect = 0.004
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Frame = +1
Query: 430 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 606
+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 572 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREAEEKAKREAE 630
Query: 607 EEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKR--QDYDLKE 780
E+ K + K E K +++A+E + + E K + EE+ KR ++ +E
Sbjct: 631 EKAKREAEEKAKREAEE-----KAKREAEEKAKREAE-ENAKREAEEKAKREAEENAKRE 684
Query: 781 LKERQKQQLRHKALKKGLDPEALTGKHPPKIQVA---SKYERRVDTRSYT 921
+E+ K++ A +K + P+I+ + + E VDT T
Sbjct: 685 AEEKVKRETEENAKRKAEEEGKREADKNPEIKSSAPLASSEANVDTSKQT 734
Score = 32.3 bits (70), Expect = 0.10
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Frame = +1
Query: 439 EKRQRLEEAEK-KRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLEEE 612
E++ RLE E KR+A QA ++A + +K K E + + E N K + EE+
Sbjct: 550 EEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEEN-AKREAEEK 608
Query: 613 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETE---KYDLEERQKR--QDYDLK 777
K + K E + + +KA+ E K E E K + EE+ KR ++ +
Sbjct: 609 AKREAEEKAK-REAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKR 667
Query: 778 ELKERQKQQLRHKALKK 828
E +E+ K++ A ++
Sbjct: 668 EAEEKAKREAEENAKRE 684
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 34.7 bits (76), Expect = 0.019
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Frame = +1
Query: 442 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE-QLEEEKK 618
++++LE K + LQ ++D KT + S + A LE + E ++EE K
Sbjct: 29 QKEKLEGDLKTQIKKLQRLRDQIKTWAS------SNDIKDKKALLENRRLIEAKMEEFKA 82
Query: 619 ISLSIRIKPLTIEGLSV-DKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQ 795
+ ++IK + EGLS+ KL K +E + I + +LE + + + + + LK
Sbjct: 83 VEREMKIKAFSKEGLSIASKLDPKEKEKQDTIQWISNAVEELERQAELIEAEAESLKATF 142
Query: 796 KQ 801
K+
Sbjct: 143 KR 144
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 34.7 bits (76), Expect = 0.019
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +1
Query: 571 QLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEER 750
+L+R K ++Q E+EKK+ +I ++ L +KL ++ L E + E L E+
Sbjct: 97 RLKREKERQQREQEKKLREQEKIAAKKMKEL--EKLEKERIRLQEQQRRKEERDQKLREK 154
Query: 751 QKRQDYDLKELKERQKQQLR-HKALKKGLD 837
++ Q +++ +++QQL+ + KG++
Sbjct: 155 EEAQRLRQEQILNKERQQLKLNNFFTKGVE 184
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 33.9 bits (74), Expect = 0.033
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +1
Query: 436 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 615
EEKR+++EE++K + +LQA + K N + KKS + + KE+ + EK
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEK 195
Query: 616 KISL 627
K L
Sbjct: 196 KAML 199
Score = 25.8 bits (54), Expect = 8.8
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +3
Query: 681 TEGPGTLGVHRQTRDREIRSRREAKE---TGLRLKRAQRKTKAATEAQS-SQEGSRPRSA 848
TEG L + + RS+R+A E L L+R + K KA EA+ +++ S+ +
Sbjct: 4 TEGKNDLRAKLAEKIQTFRSQRKATEKVDRALLLQRRKEKAKARAEAKKLAKKESKAKQE 63
Query: 849 HRQAPAQNSSS 881
+ A +S
Sbjct: 64 SKVAAYDTGNS 74
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 32.3 bits (70), Expect = 0.10
Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Frame = +1
Query: 433 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 612
+ E +L+ ++K+ + D+ + +QK +S + E+ + ++EE
Sbjct: 73 LSEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKMEEL 132
Query: 613 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKEL-KE 789
S+ + +E LS Q++Q + E K + E DL+E ++ ++ K +E
Sbjct: 133 TVESMEVVRLTRQVETLSTQYSIQRSQWVRE-DEKKKKEIQDLKELYEKSEHGAKNWERE 191
Query: 790 RQKQQLRHKALKKGLD 837
R+ Q + + K LD
Sbjct: 192 RETFQNQVSQMSKQLD 207
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 31.1 bits (67), Expect = 0.24
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 693 GTLGVHRQTRDREIRSRREAKETGLRLKRAQRKTKAATEAQSSQE 827
GTLG +Q +RE +S R+ K L K A+R+ + E + ++
Sbjct: 82 GTLGKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEK 126
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 30.3 bits (65), Expect = 0.41
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = +1
Query: 682 QKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLD 837
++AQE++ ++ L E D+E+ Q Q + L+E ++++LRH L+K LD
Sbjct: 906 KRAQEMYANVL-LGVE--DMEDDQFSQRCERMALREAERRKLRHGKLQKHLD 954
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 0.41
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +1
Query: 430 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNFTIQKKSENFGLSNAQLERNKTKE 597
++EEK LE A+ Q ++ ++KD +K + ++ G+S+A L + K K
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSA-LSKKKKKR 220
Query: 598 QLEEEKKISLSIRIKPLT 651
+ +KK S I+ T
Sbjct: 221 NRKNQKKKSTKQNIEATT 238
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 0.54
Identities = 19/72 (26%), Positives = 42/72 (58%)
Frame = +1
Query: 586 KTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQD 765
KT E+LE+E + ++S +++ L G D +A +L + + YD E++QK ++
Sbjct: 168 KTAEELEKEDREAMSAKLQELIRRGTPADLA--EANKLMKVMAG-----YDTEQKQKYKE 220
Query: 766 YDLKELKERQKQ 801
+ L +L++ +++
Sbjct: 221 HVLVDLEKVKRK 232
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 29.5 bits (63), Expect = 0.72
Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 1/156 (0%)
Frame = +1
Query: 433 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLEE 609
I E+++ + + A+ + K A + T+ + + ++ LS +R + E+
Sbjct: 280 IAERKRESGRRLQAQAAIKRKEKAAERDRELATLTELQQQSLVLSRRAFQRALEEAGFED 339
Query: 610 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKE 789
E +++ ++ I D+ RQ+ E L+ + D+E+ + EL E
Sbjct: 340 ESQLNAQVKNVQAKIRRAQRDQQRQEESE-----GSLDVTEIDVEQAFPLLNVPDAELDE 394
Query: 790 RQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYER 897
+Q RH+ L K + K I+ A++ ER
Sbjct: 395 AGLRQKRHQRLMKANYDARVRAKAEKAIEEAAEAER 430
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 29.5 bits (63), Expect = 0.72
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Frame = +1
Query: 715 KLETEKYDL---EERQKRQDYDLKELKERQKQQLRHKALKKG------LDPEALTGKHPP 867
KLETEK + EE+++++ D K+ KE K + K ++ LTG+ PP
Sbjct: 173 KLETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDKKISKNEVDSSLIEASPLTGQVPP 232
Query: 868 K 870
K
Sbjct: 233 K 233
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 454 LEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 615
+EE E+ R+ + A D + G + +S+ G + +++ KTK+QLEEE+
Sbjct: 197 VEEQERLRKETIAAFHDVN--GNKDAVSNESDEDG--DFLVKKEKTKKQLEEEE 246
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.9 bits (59), Expect = 2.2
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 547 ENFGLSNAQLERNKT-KEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLE 723
EN L + L+R K E+L + + + + + +T E L QKA E E I KLE
Sbjct: 366 ENTSLESQLLKREKQLSEELAKLRSTNAQLTDR-ITQESKKASFLEQKASEQEEVIRKLE 424
Query: 724 TEKYDLE 744
+ D++
Sbjct: 425 KDLADVD 431
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 27.9 bits (59), Expect = 2.2
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +1
Query: 433 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 612
+ EK+ + K A ++A + ASK+G T S+N L + +R + K E
Sbjct: 116 LHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHKRMRENI 175
Query: 613 KKIS---LSIRIKPLTIEGLS---VDKLRQKAQELWECI 711
IS L I T +G++ ++ L+ + ++ EC+
Sbjct: 176 WAISEPELEAEIAWNTTQGITESDLESLKDEYEKFNECL 214
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 442 KRQRLEEAEKKRQAMLQAMKDAS---KTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 612
K + +++R A +QA+ D S +T + + +SEN GL N ++ +QLE+E
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQE 291
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 718 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPP 867
LE ++YD+EE D DL+EL ++ + + ++ ++ +A G+ P
Sbjct: 84 LELDRYDIEELD--DDNDLEELDIGARRAVDARLRRRDIELDAAAGRTKP 131
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 3.8
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 601 LEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKE 780
+EE +I +S+ +KPL I K A + V E + Y+ ++Q++++ + K+
Sbjct: 13 IEETNRIRISLGLKPLDISEEKPQKELSDA-SVKSSYVDQEQQAYENWKKQEQEEINRKK 71
Query: 781 LKERQK--QQLRHK 816
+E + ++LR K
Sbjct: 72 EEELKSKFEKLRQK 85
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 520 PNFTIQKKSENFGLSNAQLERNKTKEQLEE-EKKISLSIRIKPLTIEGL 663
P FTI++K +NF ++N ERN ++L + ++ + ++ I+ L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSLAALVNVQRKLIKAL 535
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 26.6 bits (56), Expect = 5.1
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = +1
Query: 745 ERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPPK-------IQVASKYERRV 903
E++ Q L E+KER+K+ R K ++ E + + K + A +++ +
Sbjct: 36 EKRMEQKRKLDEIKEREKELKREKEEQRAAHAEKIRTRRQAKADRERMELLQAKLHQKVI 95
Query: 904 DTRSYTTKRN 933
D R KRN
Sbjct: 96 DRRRRREKRN 105
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 282 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 166
P+FA + L LF+Q+ P + + FW S+ L+ +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 672 QTPTEGPGTLGVHRQTRDREIRSRREAK 755
++ T+G GT V + TR + RSRR+ +
Sbjct: 203 ESSTKGNGTFTVSKTTRKNQPRSRRDPR 230
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 26.2 bits (55), Expect = 6.7
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Frame = +1
Query: 592 KEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWEC--------IVKLETEK--YDL 741
+EQ E +K+ I+ + ++G V+K ++ E E K+E K Y L
Sbjct: 15 EEQRNEIEKLKNLTGIEEVHVDGAKVNKRKRTFDEQSEITKDYIEYDFSKIEDTKGGYLL 74
Query: 742 EE------RQKRQDYDLKELKERQKQQLRHKALKKGLDPE 843
EE R+K + +L+E +ERQK +LR L LDPE
Sbjct: 75 EEKKVEDLREKPAERELREQEERQK-KLRLAPL--NLDPE 111
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 26.2 bits (55), Expect = 6.7
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Frame = +1
Query: 532 IQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRI-KPLTIEGLSVDKLRQKAQELWEC 708
++K+ NA++E+ + +EEE++ I I + E + KL ++ +E+ E
Sbjct: 25 LEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEV-EK 83
Query: 709 IVKLETEKYDLEERQKRQDYDLKELKERQKQ-------QLRHKALKK-GLDPEA-LTGKH 861
I++ + E+ + QK + +L+ + K+ ++ K KK +DP A T
Sbjct: 84 ILR-DEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVPKKKYKKIKVDPSARRTSSR 142
Query: 862 PPKIQVASKYERRVD----TRSYTTKRNCSR 942
+ +A E R+ R YT + +R
Sbjct: 143 MHTVLMAQSTETRLQEAKPRRKYTVSASANR 173
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -3
Query: 706 TPRVPGPSVGVCRRRDPRWSAA*CGWTGRSSSPLPAAPWSC 584
TP VP S P S + TG SSSPLP+ SC
Sbjct: 302 TPTVPPTSTSSTSTPPPPASTS---STGTSSSPLPSTSTSC 339
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/82 (19%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +1
Query: 574 LERNKTKEQLEEEK----KISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYD- 738
++ ++K+Q+++ + K ++ P ++ D + + E + ++E EK +
Sbjct: 113 MQERQSKKQIQDRESDYQKQRYDRQLTPTRVDAFQPDGTQSNGRSYAEVMRQVELEKEER 172
Query: 739 ---LEERQKRQDYDLKELKERQ 795
+E Q+R++ LKE++E +
Sbjct: 173 RVHMELNQRRREGTLKEVEEEE 194
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/69 (21%), Positives = 36/69 (52%)
Frame = +1
Query: 433 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 612
I EKR LEE +++ + + + + K ++++++ E + + +LE K + + ++
Sbjct: 65 IIEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERY---HQELEAKKLRRKQKKV 121
Query: 613 KKISLSIRI 639
K S R+
Sbjct: 122 NKEKNSPRL 130
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 733 YDLEERQKRQDYDLKELKERQKQQLRHKALKK 828
Y+ E+R KRQ+ E + R+K++ R A +K
Sbjct: 242 YEREQRAKRQEQFRLERENREKEKRRIAAQRK 273
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 436 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTK--EQLEE 609
EEK +++EE E + + ++D K+ +++K S A+ +R+ + E LE+
Sbjct: 132 EEKDRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILED 191
Query: 610 EKKI 621
+++I
Sbjct: 192 DEEI 195
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 703 ECIVKLETEKYDLEERQKRQDYDLKELKERQKQ 801
E + KLE E+Y+ + + + +K LK+ Q +
Sbjct: 391 EAMTKLEEERYEFDRHIEATSWTIKSLKKIQNR 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,794
Number of Sequences: 5004
Number of extensions: 42708
Number of successful extensions: 231
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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