Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30034
         (942 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   2.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   5.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   5.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   5.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   7.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +3

Query: 804  TEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILHDKKKL 935
            + AQS  + ++    H Q     S+ +Q      H++LH  + +
Sbjct: 905  SSAQSLLQSNQQHFPHHQIQVSTSAGLQTIRLSGHSVLHSAQSV 948


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 24/119 (20%), Positives = 50/119 (42%)
 Frame = +1

Query: 448 QRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISL 627
           +R E   +   A    M D  +T       KKS+    ++ +LE+N+        +K+ +
Sbjct: 14  ERREREAEHGYASTMPMPDDMRTVTKRPKTKKSQGSRTTHNELEKNRRAHLRNCLEKLKV 73

Query: 628 SIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQ 804
            + + P T    ++  L  KA+   + + + E +    +E+  R+   L+   E+   Q
Sbjct: 74  LVPLGPETSRHTTLG-LLTKAKRFIKSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQ 131


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 466 EKKRQAMLQAMKDASKTGPNFTIQKKSE 549
           EKKRQA L  + +A + G   T ++  E
Sbjct: 313 EKKRQAFLDLLIEAGQNGVLLTDKEVKE 340


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 936 TVSFCRVGSCVDTPLVLGRYLNFGRVLA 853
           T +FC  G C+D    L + +NF   LA
Sbjct: 454 TKTFCCKGYCMDLLKELSKTINFTYSLA 481


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 433 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFG 558
           I  + +R++  EK    +L  + +AS   PN  +     NFG
Sbjct: 327 INTRGERIQLTEKNGIDVLGNIMEASILSPNQNVYGDLHNFG 368


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 280 AVCAIR*CIPSTVHP 236
           A C I  C P TVHP
Sbjct: 357 AFCNIVSCSPQTVHP 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.130    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,091
Number of Sequences: 438
Number of extensions: 2915
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)