Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30033
         (558 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   1.8  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   1.8  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   1.8  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   5.4  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   7.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.5  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 372 YHHVPRYRRQDAEGDHRPR 316
           Y H+ RY+ +  +GD R R
Sbjct: 159 YQHLHRYKEEALQGDGRMR 177


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 372 YHHVPRYRRQDAEGDHRPR 316
           Y H+ RY+ +  +GD R R
Sbjct: 159 YQHLHRYKEEALQGDGRMR 177


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 372 YHHVPRYRRQDAEGDHRPR 316
           Y H+ RY+ +  +GD R R
Sbjct: 159 YQHLHRYKEEALQGDGRMR 177


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -2

Query: 425 CGVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP 312
           CG DI   L   TV+S        +   + K +  +AP
Sbjct: 514 CGSDITTRLLLPTVLSMANDKVANVRFNVAKTLQKIAP 551


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +1

Query: 109 AQHHTAPGSRGRAA*KHLRXTMPGPDSSYSSFEIHICWKVDREARMDP 252
           AQ H++    G      +R   P  ++      + +  K DREA + P
Sbjct: 189 AQSHSSVERAGLLGGVKMRGLQPDDNNRLRGETLEVAIKEDREAGLIP 236


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 360 PRYRRQDAEGDHRPRALDHQDQDHRSPR 277
           PRY R  A+G   PR   +   D R  R
Sbjct: 69  PRYGRAAAQGMPYPRFPPYDRMDIRDRR 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,066
Number of Sequences: 336
Number of extensions: 2481
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)