Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30033
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 253 1e-68
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 127 1e-30
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 113 2e-26
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 109 2e-25
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 91 1e-19
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 74 2e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 69 6e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 67 1e-12
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 4e-05
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 1.9
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 5.7
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 7.5
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 10.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 253 bits (619), Expect = 1e-68
Identities = 116/135 (85%), Positives = 124/135 (91%)
Frame = -2
Query: 557 ELPDGQVITIGNERFRCP*ALFQPSFMGMESCGIHETVYNSIMKCGVDIRKDLYANTVMS 378
ELPDGQVITIGNERFR P ALFQPS +G+E+ GIHE YNSIMKC VDIRKDLY N VMS
Sbjct: 241 ELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMS 300
Query: 377 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 198
GGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWISK+
Sbjct: 301 GGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 197 EYDESGPGIVXRKCF 153
EYDESGPGIV RKCF
Sbjct: 361 EYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 127 bits (307), Expect = 1e-30
Identities = 58/135 (42%), Positives = 89/135 (65%)
Frame = -2
Query: 557 ELPDGQVITIGNERFRCP*ALFQPSFMGMESCGIHETVYNSIMKCGVDIRKDLYANTVMS 378
+LPD Q IT+G E F P LF P MG E+ G+H ++ SI+ +D+R LY+N V+S
Sbjct: 246 QLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLS 305
Query: 377 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 198
GG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ E
Sbjct: 306 GGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSE 365
Query: 197 EYDESGPGIVXRKCF 153
EY ++ ++ R+ F
Sbjct: 366 EY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 113 bits (271), Expect = 2e-26
Identities = 58/137 (42%), Positives = 88/137 (64%), Gaps = 12/137 (8%)
Frame = -2
Query: 554 LPDGQVITIGNERFRCP*ALFQPSFMGMESCGIHETVYNSIMKCGVDIRKDLYANTVMSG 375
LPDG+VI +G+ER+ CP LFQP +G E G+ E ++++I VDIRK LY V+SG
Sbjct: 242 LPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSG 301
Query: 374 GTTMYPGIADRMQKEITAL--------APSTI---KIKIIAPPERKYSVWIGGSILAS-L 231
G++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA +
Sbjct: 302 GSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIM 361
Query: 230 STFQQMWISKEEYDESG 180
+ MW+SK E++E G
Sbjct: 362 AQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 109 bits (263), Expect = 2e-25
Identities = 59/137 (43%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Frame = -2
Query: 557 ELPDGQVITIGNERFRCP*ALFQPSFMGMESC---------GIHETVYNSIMKCGVDIRK 405
E PDG G ERFR LF PSF S G+HE VY SI+ C ++R
Sbjct: 282 EFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRS 341
Query: 404 DLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKII-APPERKYSVWIGGSILASL 231
L N V++GGT++ PG+++R+Q E+ LA S I + +VW GGSILASL
Sbjct: 342 PLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASL 401
Query: 230 STFQQMWISKEEYDESG 180
FQ +W+SK+EYDE G
Sbjct: 402 DNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 90.6 bits (215), Expect = 1e-19
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 6/108 (5%)
Frame = -2
Query: 461 GIHETVYNSIMKCGVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 282
GI + N I +C VDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 281 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVXRKC 156
ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 73.7 bits (173), Expect = 2e-14
Identities = 42/128 (32%), Positives = 63/128 (49%)
Frame = -2
Query: 542 QVITIGNERFRCP*ALFQPSFMGMESCGIHETVYNSIMKCGVDIRKDLYANTVMSGGTTM 363
QV+ + NERF P LF PS + + GI E V S+ +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 362 YPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDES 183
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 182 GPGIVXRK 159
G I+ RK
Sbjct: 391 GANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 68.5 bits (160), Expect = 6e-13
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 15/140 (10%)
Frame = -2
Query: 536 ITIGNERFRCP*ALFQPSFMGMESCG-IHETVYNSIMKCGVDIRKDLYANTVMSGGTTMY 360
I +G ERF P F P + + E V N + +D+RK LY N V+SGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 359 PGIADRMQKEITALAPSTI--------------KIKIIAPPERKYSVWIGGSILASLSTF 222
+R+Q+++ + I + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 221 QQMWISKEEYDESGPGIVXR 162
+K +Y+E G I R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 67.3 bits (157), Expect = 1e-12
Identities = 31/115 (26%), Positives = 61/115 (53%)
Frame = -2
Query: 521 ERFRCP*ALFQPSFMGMESCGIHETVYNSIMKCGVDIRKDLYANTVMSGGTTMYPGIADR 342
E+ R P +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 341 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 177
+++E+T++ P I + W G S + F+ +++EEY E GP
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 407 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 237
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 236 SLSTFQQMWISKEEYDESGPGIVXRK 159
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 335 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 225
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 5.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 456 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 328
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 309 DHQDQDHRSPREEVLRMDRWIHPG 238
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 268 YFLSGGAMILILMVEGARAVISFCILSAIPGY 363
Y +SGGA + +A +S CI +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,439
Number of Sequences: 5004
Number of extensions: 37955
Number of successful extensions: 115
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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