Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30033
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             238   2e-65
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.097
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  238 bits (583), Expect = 2e-65
 Identities = 110/118 (93%), Positives = 115/118 (97%)
 Frame = -2

Query: 557 ELPDGQVITIGNERFRCP*ALFQPSFMGMESCGIHETVYNSIMKCGVDIRKDLYANTVMS 378
           ELPDGQVITIGNERFRCP ALFQPSF+GME+CGIHET YNSIMKC VDIRKDLYANTV+S
Sbjct: 16  ELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLS 75

Query: 377 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 204
           GGTTMYPGIADRMQKEITALAPST+KIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 76  GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.5 bits (58), Expect = 0.097
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -1

Query: 399 VRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRM 259
           +++H H++ +HH    +    +  HRP     Q Q  +  R+E  R+
Sbjct: 138 LQRHHHLQNHHH--HLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRL 182


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -2

Query: 416 DIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWI 255
           DI++  Y + V      MYP  +  M+K I+    +  KI I  P E K  +WI
Sbjct: 349 DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK--IWI 398


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 30  DGVRLDVQFSGITRYNVLTVAFRTRTSTTPHSTGVT 137
           D  +LD  F   T+ N + ++ R++ STT    G T
Sbjct: 354 DSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPT 389


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -1

Query: 441 QLHHEVRRRHP*GPVRQHRH---VRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRSPREE 271
           Q+HH++  +HP    +Q +H    +  H     +    +   + +A   Q Q    PR++
Sbjct: 167 QMHHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPRQQ 226


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 441 QLHHEVRRRHP*GPVRQHR 385
           QL+ +V+  H   PV+QHR
Sbjct: 266 QLNSDVQPGHGSPPVKQHR 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,885
Number of Sequences: 438
Number of extensions: 3146
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)