Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30027
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 181 1e-46
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 169 3e-43
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 123 3e-29
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 104 1e-23
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 103 2e-23
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 30 0.29
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 29 0.89
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 28 1.2
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 3.6
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 26 4.8
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 26 4.8
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 26 6.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.3
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 26 6.3
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 8.3
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 25 8.3
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 181 bits (440), Expect = 1e-46
Identities = 91/186 (48%), Positives = 120/186 (64%), Gaps = 3/186 (1%)
Frame = +2
Query: 155 KPYDGKKACWVPDEKEGFVQGEIKATKGD---LVTVNLPGGEEKTFKKDQLSQVNPPKFE 325
K D K+ W+ D + F + IK D +V N +EK +D++ VNP KF+
Sbjct: 19 KDIDDKRWVWISDPETAFTKAWIKEDLPDKKYVVRYN-NSRDEKIVGEDEIDPVNPAKFD 77
Query: 326 KVEDMADLTYLNDAAVLHNLRQRYYAKLIYTYSGLFCVAINPYKRFPVYTTRCAKLYRGK 505
+V DMA+LTYLN+ AV +NL QRY + IYTYSGLF VA+NPY P+YT +LY+ K
Sbjct: 78 RVNDMAELTYLNEPAVTYNLEQRYLSDQIYTYSGLFLVAVNPYCGLPIYTKDIIQLYKDK 137
Query: 506 RRSEVPPHIFAISDGAYVNMLTNHENQSMLITGESGAGKTENTKKVIAYFATVGASQKKD 685
+ PH+FAI+D AY N+L N ENQS+L+TGESGAGKTENTK++I Y A + +S
Sbjct: 138 TQERKLPHVFAIADLAYNNLLENKENQSILVTGESGAGKTENTKRIIQYLAAIASSTTVG 197
Query: 686 PSQGEE 703
SQ EE
Sbjct: 198 SSQVEE 203
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 169 bits (411), Expect = 3e-43
Identities = 85/182 (46%), Positives = 111/182 (60%), Gaps = 1/182 (0%)
Frame = +2
Query: 161 YDGKKACWVPDEKEGFVQGEIKATKGDLVTVNLP-GGEEKTFKKDQLSQVNPPKFEKVED 337
+D + W+PD KE FV+ I G+ V L G E+ +VNPPKF+ V+D
Sbjct: 34 FDERTWIWIPDSKESFVKAWIVEDLGEKYRVKLERDGSERIVDGFDAEKVNPPKFDMVDD 93
Query: 338 MADLTYLNDAAVLHNLRQRYYAKLIYTYSGLFCVAINPYKRFPVYTTRCAKLYRGKRRSE 517
MA LT LN+ +V++NL QRY LIYTYSGLF VA+NPY P+Y + Y+ K+ E
Sbjct: 94 MAALTCLNEPSVVNNLTQRYEKDLIYTYSGLFLVAVNPYCHLPIYGDDVVRKYQSKQFKE 153
Query: 518 VPPHIFAISDGAYVNMLTNHENQSMLITGESGAGKTENTKKVIAYFATVGASQKKDPSQG 697
PHIF +D AY ++L NQS+L+TGESGAGKTE TKKVI Y +V + D Q
Sbjct: 154 TKPHIFGTADAAYRSLLERRINQSILVTGESGAGKTETTKKVIQYLTSVTDASTSDSQQL 213
Query: 698 EE 703
E+
Sbjct: 214 EK 215
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 123 bits (296), Expect = 3e-29
Identities = 66/178 (37%), Positives = 104/178 (58%), Gaps = 14/178 (7%)
Frame = +2
Query: 179 CWVPDEKEGFVQGEIK--ATKGDLVTVNLPGGEEK----TFKKDQLSQVNP---PKFEKV 331
CW+PDE+ ++ G IK +G+ + + E T K D L+ P +
Sbjct: 12 CWIPDEQSQWIPGSIKDCRVEGEKAFLTVQDENENETVITVKPDDLNYEGRNGLPFLRSI 71
Query: 332 ----EDMADLTYLNDAAVLHNLRQRYYAKLIYTYSGLFCVAINPYKRFP-VYTTRCAKLY 496
+D+ DL+YLN+ +VL L RY IYTYSG+ +A+NP++R P +YT + Y
Sbjct: 72 NSDADDLTDLSYLNEPSVLDALSTRYNQLQIYTYSGIVLIAVNPFQRLPNLYTHEIVRAY 131
Query: 497 RGKRRSEVPPHIFAISDGAYVNMLTNHENQSMLITGESGAGKTENTKKVIAYFATVGA 670
K R E+ PH++AI++ +Y M H+NQ+++I+GESGAGKT + + ++ YFA+V A
Sbjct: 132 SEKSRDELDPHLYAIAEDSYKCMNQEHKNQTIIISGESGAGKTVSARYIMRYFASVQA 189
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 104 bits (250), Expect = 1e-23
Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 6/168 (3%)
Frame = +2
Query: 179 CWVPDEKEGFVQG---EIKATKGDLV--TVNLPGGEEKTFKKDQLSQVNPPKFEKVEDMA 343
CWV + + EIK G V TV G +T QL N + E D+
Sbjct: 12 CWVSNNNGHWDAARLIEIKDNGGGKVVATVAKSSGVLETVNYQQLQNRNIGQSESPSDLT 71
Query: 344 DLTYLNDAAVLHNLRQRYYAKLIYTYSGLFCVAINPYKRFP-VYTTRCAKLYRGKRRSEV 520
+L YLN+ +VLH L RY K IYTYSG+ V+INPY+ P Y K + +
Sbjct: 72 NLPYLNEPSVLHALHNRYNNKQIYTYSGIVLVSINPYQNLPEFYNDNLIKHFHKDPEAAK 131
Query: 521 PPHIFAISDGAYVNMLTNHENQSMLITGESGAGKTENTKKVIAYFATV 664
PH+++I+ Y + T+ +NQ+++++GESGAGKT K ++ Y +V
Sbjct: 132 VPHLYSIASSCYHALTTDSKNQTIIVSGESGAGKTVAAKYIMRYLTSV 179
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 103 bits (248), Expect = 2e-23
Identities = 47/115 (40%), Positives = 71/115 (61%)
Frame = +2
Query: 329 VEDMADLTYLNDAAVLHNLRQRYYAKLIYTYSGLFCVAINPYKRFPVYTTRCAKLYRGKR 508
V+D+ L+ + D + NL R+ IYTY G +++NP++ +YT K Y+GK
Sbjct: 42 VDDLTLLSKITDEEINKNLELRFRNGEIYTYIGHVLISVNPFRDLGIYTMDILKSYQGKN 101
Query: 509 RSEVPPHIFAISDGAYVNMLTNHENQSMLITGESGAGKTENTKKVIAYFATVGAS 673
R E PH++AI++ AY M + HENQ ++I+GESGAGKTE K+++ Y V S
Sbjct: 102 RLETSPHVYAIAENAYYQMKSYHENQCIIISGESGAGKTEAAKRIMQYITHVSKS 156
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 30.3 bits (65), Expect = 0.29
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 575 HENQSMLITGESGAGKTENTKKVIAY 652
HENQ ++ GE+G+GKT + + Y
Sbjct: 89 HENQIIVFVGETGSGKTTQIPQFVLY 114
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 28.7 bits (61), Expect = 0.89
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -1
Query: 282 KVFSSPPGRLTVTRSPLVALISPCTKP---SFSSGTQH 178
KVF SP G L + RS V + C+ P SF+S T H
Sbjct: 511 KVFDSPTGSLGMRRSLTVGANASCSNPTNLSFASLTLH 548
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 375 STAASFRYVRSAMSSTFSNFGGLTCESWSFLKVFSSP 265
S+ + R S + F N+ G T WSF+ F++P
Sbjct: 220 SSTSETRNTGSYIFGNFENYSGWTNMGWSFILCFTTP 256
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 575 HENQSMLITGESGAGKTENTKKVIAYFA 658
H+N++ ++ E G GKT T ++Y A
Sbjct: 391 HKNENGILADEMGLGKTVQTVAFLSYLA 418
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -1
Query: 372 TAASFRYVRSAMSSTF-SNFGGLTCESWSFLKVFSSPPGR---LTVTRSPLVALISPC 211
T F +V+ + F S F GLTC +WS F + G+ +++ PL L++ C
Sbjct: 345 TLKLFDFVKEHVLDVFHSYFAGLTCVTWSPDGKFIAIGGKDDLVSIYSFPLRKLVARC 402
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 26.2 bits (55), Expect = 4.8
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -1
Query: 444 MATQKRPEYV*ISFA*YRCRRLWSTAASFRYVRSAMSSTFSN-FGGLTCESWSFLKVFSS 268
+ATQ PE A RC + + T + + S N FGGLT + L V S+
Sbjct: 184 LATQFHPEKS--GSAGLRCLKAFLTGNYEQPISGEASKLIENSFGGLTKRIIACLDVRSN 241
Query: 267 PPGRLTVTR 241
G L VT+
Sbjct: 242 DAGDLVVTK 250
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 640 GNCVLRHCRCLPEEGPKPGRRRAPWK 717
G CVL+ LPEE P + W+
Sbjct: 134 GRCVLQFLSVLPEEASDPRKTSLSWE 159
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 114 YGVGSGSSPSWTTGFGIFGG 55
+G GSG P GFG FGG
Sbjct: 193 FGGGSGGPPPGPGGFGGFGG 212
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 431 FCVAINPYKRFPVYTTRCAKLYR-GKRRSEVPPHIFAISDGAYVNMLTNHENQSMLITGE 607
F V +N + P+ ++ L++ R + P IF + + + + S+ TG
Sbjct: 278 FSVPLNSASKSPIGSS----LFKTSDSRKKSVPSIFLSDEQKRILDMVVEQQHSIFFTGS 333
Query: 608 SGAGKTENTKKVI 646
+G GK+ +K+I
Sbjct: 334 AGTGKSVLLRKII 346
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +2
Query: 578 ENQSMLITGESGAGKT 625
+NQ +++ GE+G+GKT
Sbjct: 507 DNQVLIVVGETGSGKT 522
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 8.3
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Frame = +2
Query: 140 RIDQSKPYDGKKACWVPDEKEGFVQGEIKATKGDLVTVNLP---GGEEKTFKKDQLSQVN 310
R Q++ D W+ E E ++G + D N P E F L N
Sbjct: 222 RFQQNRLLDRNLKGWIQGESEKALKGRRTTKRNDKENYNYPDFSNDNELLFSLATLIVEN 281
Query: 311 PPKFEKVEDMADLTYL 358
PK E + L YL
Sbjct: 282 NPKKENIIPKYYLRYL 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,497
Number of Sequences: 5004
Number of extensions: 65443
Number of successful extensions: 230
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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