Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30027
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   5.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   5.1  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 505 LATVQLGASCRVHG 464
           L  V LG++CR+HG
Sbjct: 433 LEAVNLGSACRIHG 446


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 493 QLGASCRVHGESLVRVDGHTE 431
           + G SC +HG  L  +  HTE
Sbjct: 429 RFGGSCLIHGPPLPPLPLHTE 449


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 493 QLGASCRVHGESLVRVDGHTE 431
           + G SC +HG  L  +  HTE
Sbjct: 429 RFGGSCLIHGPPLPPLPLHTE 449


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 374 LHNLRQRYYAKLIYTYSGL 430
           LHN+   +Y K++Y Y G+
Sbjct: 286 LHNIEGTHYVKIVY-YLGI 303


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 374 LHNLRQRYYAKLIYTYSGL 430
           LHN+   +Y K++Y Y G+
Sbjct: 301 LHNIEGTHYVKIVY-YLGI 318


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 258 RLTVTRSPLVALISPCT 208
           R  +T++PL  +  PCT
Sbjct: 103 RKVITKAPLECMCRPCT 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,082
Number of Sequences: 438
Number of extensions: 5076
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)