Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30026X
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   3.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.8  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   9.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 30  LKYNSTTPDQLRTINYRAYNTYIIL 104
           L +++T PD+++ +  R  N Y+ L
Sbjct: 386 LMFSATFPDEVQHLARRFLNNYLFL 410


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -1

Query: 426 RSDCTTRKASVTFPRRACARSSGNWT 349
           +S CT       F ++ C    G+WT
Sbjct: 148 QSSCTIDVTYFPFDQQTCIMKFGSWT 173


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 48  TPDQLRTINYRAYNTYIILEKLADRY 125
           +PD+   + YR YN  +I  + + +Y
Sbjct: 417 SPDRTSPMEYRLYNPALIQSQPSPQY 442


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 330 NSMASSKRSTLTEAAPSTSTS 268
           NS ASS R     A  STSTS
Sbjct: 821 NSPASSPRYLSAAATSSTSTS 841


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/26 (26%), Positives = 11/26 (42%)
 Frame = -1

Query: 426 RSDCTTRKASVTFPRRACARSSGNWT 349
           +S C        F  ++C    G+WT
Sbjct: 155 KSSCEINVEYFPFDEQSCIMKFGSWT 180


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 462 RTLRPCRKNSGKRSDCTTRKASV 394
           R LR    N    S+CTTRK  +
Sbjct: 56  RALRLDTGNFSWGSECTTRKTRI 78


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 304 DTDGSGTVDFDEF 266
           DTDG G ++ +EF
Sbjct: 284 DTDGDGKLNVNEF 296


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 437 FFLHGLSVLFND 472
           FFLHG  +++ D
Sbjct: 99  FFLHGRGIVYRD 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,491
Number of Sequences: 438
Number of extensions: 2199
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)