Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30024X
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   2.8  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    24   8.6  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 199 PSYICLTASYSVSPMRRLLEMSHTPPSASV 288
           P+Y  LT +  VSP R     S   PSASV
Sbjct: 420 PNYANLTPTPQVSPKRPTYSRSSPLPSASV 449


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 296 GEHTEAEGGVCDISNKRRMGLTE*DAVKQMYDG 198
           G+H++++     ISN +   L++ D V+Q+ +G
Sbjct: 187 GDHSDSKTYESPISNSQAASLSDSDMVQQIKNG 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,036,535
Number of Sequences: 5004
Number of extensions: 16738
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)