Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30024X
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64470.2 68418.m08100 expressed protein similar to unknown pr...    27   2.9  
At5g64470.1 68418.m08099 expressed protein similar to unknown pr...    27   2.9  
At1g49100.1 68414.m05505 leucine-rich repeat protein kinase, put...    27   3.9  
At1g30850.1 68414.m03773 hypothetical protein                          27   5.2  
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    26   6.8  
At2g41050.1 68415.m05069 PQ-loop repeat family protein / transme...    26   6.8  

>At5g64470.2 68418.m08100 expressed protein similar to unknown
           protein (gb|AAD15463.1)
          Length = 407

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 142 VYLFIVPRRPGTSQRAAPPPLLLFIVKRIFYKE 44
           ++  ++ RRP TS  A+PPP  LF  + +F  E
Sbjct: 35  LFYSLILRRPITSNIASPPPCDLFSGRWVFNPE 67


>At5g64470.1 68418.m08099 expressed protein similar to unknown
           protein (gb|AAD15463.1)
          Length = 325

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 142 VYLFIVPRRPGTSQRAAPPPLLLFIVKRIFYKE 44
           ++  ++ RRP TS  A+PPP  LF  + +F  E
Sbjct: 35  LFYSLILRRPITSNIASPPPCDLFSGRWVFNPE 67


>At1g49100.1 68414.m05505 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 888

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 133 INTQAARGGAYRDFSILMSSAMPSYICLTASYSVSPMRRLLEM 261
           +N  A  GG + +  I MS + P  ICL  + + +PM   LE+
Sbjct: 136 VNFNATGGGVFVEI-IHMSRSTPLDICLVKTGTTTPMISTLEL 177


>At1g30850.1 68414.m03773 hypothetical protein
          Length = 300

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 235 SPMRRLLEMSHTPPSASVCSPRVPRTC 315
           SP RR+   S +  SASV  P  PRTC
Sbjct: 254 SPQRRV-RFSTSSSSASVSCPTSPRTC 279


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 83  WRRGGPLTSARPPRNDK*IHRRLAAAPT 166
           W+ GG LT++  P+  +  H++L   PT
Sbjct: 101 WKMGGFLTNSYSPKKFRSRHKKLCFGPT 128


>At2g41050.1 68415.m05069 PQ-loop repeat family protein /
           transmembrane family protein similar to SP|Q10482 Seven
           transmembrane protein 1 {Schizosaccharomyces pombe};
           contains Pfam profile PF04193: PQ loop repeat
          Length = 376

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 247 RLLEMSHTPPSASVCSPRVPR 309
           R L  SHTPP+ SV + R+ R
Sbjct: 164 RSLSSSHTPPAGSVLAQRMAR 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,663,832
Number of Sequences: 28952
Number of extensions: 96105
Number of successful extensions: 328
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)