Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30022
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   4.0  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   7.0  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    26   7.0  
SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   9.3  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 45   NKYFNLIQNLLSLCT-NSYQALLN 113
            N + +L+Q LLS CT  S  ALLN
Sbjct: 1226 NSFHSLVQKLLSCCTEGSINALLN 1249


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 764 WRTSQTSSLQIKAYGVPDIDVFQTVDL 684
           W+TS   +LQ++AY +  +  F T+DL
Sbjct: 96  WKTSTNPTLQVRAYMLDLLLPFFTLDL 122


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 63  IQNLLSLCTNSYQALLNF 116
           I N++++C+NSY  L+N+
Sbjct: 95  ILNIVTICSNSYSILVNY 112


>SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 613 RVCKSHDRGQTVC*LLGRCLFFSHRSTVWN 702
           R+C+   RG+  C  + RCL+ +H    WN
Sbjct: 6   RICRDIWRGK--CIYVFRCLYTNHAVVSWN 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,884
Number of Sequences: 5004
Number of extensions: 67566
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)