Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30022
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.46 
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)                    32   0.46 
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)                      29   4.2  
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_29188| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)                   28   9.8  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            28   9.8  

>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
 Frame = -3

Query: 676 KKDIAQVVSTLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVI-GLQAG- 503
           K ++  V+  + A+GR  Y   +   P LGPK + +  R F++  L  G+T+I   Q G 
Sbjct: 521 KSNMWNVICCIHAVGRRAYSLGK-DVPQLGPKESTKNPRQFTERQLNEGKTIINSFQMGP 579

Query: 502 -SNKGATQSGQNLGAGRKIL 446
            +   AT SGQ+ G  R+I+
Sbjct: 580 AAKNVATASGQSFGRQRQII 599


>SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 37

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = -3

Query: 598 PCLGPKPADECKRDFSDEVLKAGQTVI 518
           P LGPK A+   R+F++E L+AG++++
Sbjct: 10  PTLGPKEAEANVREFTEEQLRAGESIL 36


>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 17/50 (34%), Positives = 31/50 (62%)
 Frame = -3

Query: 676 KKDIAQVVSTLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQ 527
           K+++  V++ + ALGR+ +   + +   LGPK A    R+F++E  +AGQ
Sbjct: 156 KQNMPGVINGIHALGRKAHSTGK-TCLALGPKEASANPREFTEEQRRAGQ 204



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 722 GVPDIDVFQTVDLWEKK 672
           GVP  D+FQTVDL+EK+
Sbjct: 141 GVPKTDMFQTVDLYEKQ 157


>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
          Length = 195

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = -3

Query: 598 PCLGPKPADECKRDFSDEVLKAGQTVI 518
           P LGPK A+   R+F++E L+AG++++
Sbjct: 129 PTLGPKEAEANVREFTEEQLRAGESIL 155


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +3

Query: 399  LKINITLCWCCVHLPIKILRPAPRFCPD*VAPLLDPACRPITVC 530
            +++ + +C+ CVHL +++  P    C      +  P C  +  C
Sbjct: 1039 VRVCLPVCFSCVHLSVRVCLPVCFSCVHLSVRVCSPVCSRVFTC 1082



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/55 (23%), Positives = 21/55 (38%)
 Frame = +3

Query: 366  VHYHTNLYKIILKINITLCWCCVHLPIKILRPAPRFCPD*VAPLLDPACRPITVC 530
            VH    +   +     T  + CVHL +++  P    C      +L P C  +  C
Sbjct: 1102 VHLSVRVLSPVCSRVFTCLYACVHLSVRVCLPVCFSCVHLSVRVLSPVCPRVFTC 1156


>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -2

Query: 734 IKAYGVPDIDVFQTVDLWEKK 672
           IK+YGV +  +F TVDL+EK+
Sbjct: 221 IKSYGVQEEYIFVTVDLYEKR 241


>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
          Length = 89

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -2

Query: 731 KAYGVPDIDVFQTVDLWEKK 672
           ++ GV  +D+FQTVDL+EK+
Sbjct: 29  ESLGVSKVDLFQTVDLYEKQ 48



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 676 KKDIAQVVSTLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTV 521
           K D+ Q V           R    + P LGPK A+   R F ++ L+AG+ +
Sbjct: 35  KVDLFQTVDLYEKQNMAAARAKGLNCPQLGPKEAEANPRSFDEDKLRAGKGI 86


>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 592 LGPKPADECKRDFSDEVLKAGQTVIG 515
           LGP P+D+  RDF    L++GQ V G
Sbjct: 233 LGPDPSDKKVRDFIWNTLQSGQVVPG 258


>SB_29188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +1

Query: 640 QTVC*LLGRCLFFSHRSTVWNTSMSGTPYALIC 738
           Q VC  +G C   S R T WN S+SGT     C
Sbjct: 326 QEVCDNIGACT--SGRITQWNVSVSGTTSLYTC 356


>SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)
          Length = 558

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 639 PSVVRLTDTRNGAAPASDPSPLTNANVTFLMKS*RPGK 526
           PS +R+ D  +   P  +  P+T   V   + S +PGK
Sbjct: 20  PSTIRILDVCSNTTPCRELRPVTEGQVLKELHSLKPGK 57



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 639 PSVVRLTDTRNGAAPASDPSPLTNANVTFLMKS*RPGK 526
           PS +R+ D  +   P  +  P+T   V   + S +PGK
Sbjct: 467 PSTIRILDVCSNTTPCRELRPVTEGQVLKELHSLKPGK 504


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 725 YGVPDIDVFQTVDLWEKK 672
           +GV   D+FQTVDL+EK+
Sbjct: 713 FGVAKSDLFQTVDLYEKQ 730


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,079,212
Number of Sequences: 59808
Number of extensions: 510144
Number of successful extensions: 1037
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)