Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30021
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    29   0.61 
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    27   2.5  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.3  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    27   3.3  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.7  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    25   7.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.6  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   7.6  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   10.0 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   10.0 

>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 462 EEAEKKRQAMLQAMKDASKTGPTSPSKRRA 551
           E+AEK R+   Q  + A KT PTSP    A
Sbjct: 531 EQAEKIRRLQQQLDRFAGKTSPTSPESNNA 560


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 438 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPTSPS 539
           +  +R R E+  +   A  +  KDAS  GP +PS
Sbjct: 43  VHHERNRSEDILRTGGATSETTKDASAAGPVTPS 76


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 287 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 171
           P+FA  +   L LF+Q+ P + +    FW S+ L+  +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 441 EEKRQRLEEAEKKRQAMLQA 500
           EEKR+++EE++K  + +LQA
Sbjct: 138 EEKRRKIEESDKWHRVLLQA 157


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 102 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNVES 1
           CW  I    G S  L+  AL+L PA+    NV S
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNVLS 325


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 499 P*KMPARPDQLHHPKEERNFGLSNAQLERNKTKEQLEEEK 618
           P  +P +P Q H         L  A+LE+N  KE ++  K
Sbjct: 131 PALIPIKPKQAHREASRERKALIAAKLEKNIEKELVKRLK 170


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -1

Query: 670 TERPSMVSGLCGWTGRSSSPLPAAPWSC 587
           TE  S  S     TG SSSPLP+   SC
Sbjct: 89  TESTSSTSS-ASTTGSSSSPLPSTSTSC 115


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 444 EKRQRLEEAEKKRQAMLQAMKDASKTGPTS 533
           E RQ+ EE ++++QAM +A + A+ T  TS
Sbjct: 55  ELRQKYEEEQRRQQAM-EAKRIAASTRQTS 83


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 204 EFIKRQDQKRSDLDEQLKEY 263
           E +KR+DQK+ D+ E L+EY
Sbjct: 272 ELLKRRDQKQQDV-EALQEY 290


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 95  CLLSVARVEVGHSVTRHWFLDRQH 24
           C L +  +   +++ R W L R+H
Sbjct: 80  CCLQILGIATSYTILRSWLLSRKH 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,150
Number of Sequences: 5004
Number of extensions: 25172
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)