Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30021
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97194-9|AAB52452.1|  336|Caenorhabditis elegans Hypothetical pr...    32   0.32 
U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical ...    28   7.0  

>U97194-9|AAB52452.1|  336|Caenorhabditis elegans Hypothetical
           protein C37A2.8a protein.
          Length = 336

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 520 PDQLHHPKEERNFGLSNAQLERNKTKEQLEEEK 618
           P+  HH +E+R +G S+ +L  N+ K + E EK
Sbjct: 190 PEHYHHSEEQRVYGTSHMRLSLNENKRKEEIEK 222


>U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical
           protein M02B7.5 protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 214 SVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNAL 318
           S+K  +G        N+STNG N+   RR+S N+L
Sbjct: 594 SMKLSNGSNSSAGSSNSSTNGVNNSSFRRLSFNSL 628


>AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical
           protein Y6E2A.8 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +3

Query: 447 KRQRLEEAEKKRQAMLQAMKDASKTGPTSPSKRR 548
           KR+ ++ AEK ++A L+  K++SK+     +K++
Sbjct: 323 KRETMKRAEKMKEAELKKKKESSKSKEEDKNKKK 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,408,636
Number of Sequences: 27780
Number of extensions: 150873
Number of successful extensions: 735
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)