Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30021
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23930.1 68416.m03006 expressed protein                             33   0.17 
At5g14390.1 68418.m01681 expressed protein                             30   1.6  
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea...    29   2.1  
At3g43160.1 68416.m04554 expressed protein merozoite surface pro...    28   6.6  
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c...    27   8.7  

>At3g23930.1 68416.m03006 expressed protein
          Length = 224

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 168 KPAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQR 287
           K   K +  G    IK +D++   +  QLKE   EWRK+R
Sbjct: 17  KETSKDQSRGRRHLIKERDEREKVMFLQLKEAEREWRKER 56


>At5g14390.1 68418.m01681 expressed protein
          Length = 369

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 435 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPTSPSKRR 548
           D+E  RQ ++  EK RQ++ +  K+    GP+  SK R
Sbjct: 280 DLEMPRQSVDRREKPRQSVDKREKEKPPKGPSKKSKLR 317


>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
           shock protein 83 (HSP83) nearly identical to SP|P27323
           Heat shock protein 81-1 (HSP81-1) (Heat shock protein
           83) {Arabidopsis thaliana}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00183: Hsp90 protein
          Length = 705

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 177 PKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEW 275
           PK+E EG+ E +  + +K     +++KE  +EW
Sbjct: 232 PKKENEGEVEEVDEEKEKDGKKKKKIKEVSHEW 264


>At3g43160.1 68416.m04554 expressed protein merozoite surface
           protein 2 (MSP-2), EMBL:PFU72951, Plasmodium falciparum
          Length = 295

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 208 SSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSR 330
           +S+ +TRSGR +++    +ST   NS  R   SS   K  R
Sbjct: 103 NSTTRTRSGRGFIDYVLESSTGTENSSTRTAESSTRTKNGR 143


>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
           chloroplast (DRT111) nearly identical to SP|P42698
           DNA-damage-repair/toleration protein DRT111, chloroplast
           precursor {Arabidopsis thaliana}; contains Pfam profiles
           PF01585: G-patch domain, PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 387

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 511 PARPDQLHHPKEERNFGLSNAQLERNKTKEQLEEEKK 621
           PARP+     K E+    + A+++R   K + E+E++
Sbjct: 104 PARPNDYEEYKREKKRKATEAEMKREMDKRRQEDEER 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,000,315
Number of Sequences: 28952
Number of extensions: 146314
Number of successful extensions: 581
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)