Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30020
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    29   0.73 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.9  
SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|c...    27   2.9  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   2.9  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             26   5.1  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   9.0  

>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 598 WPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIEKKI 437
           WP    ++  + KT L W  E   L  + + +GG   Q Y  + SA +E  KK+
Sbjct: 195 WPNVGHLFAGKWKTTLPWRVESPELHAVQVHLGGSSLQWYV-IPSAHSESFKKL 247


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 496  DLQQVYKRLVSAVNEIEKKIPFSHHDR 416
            D+QQ+ + +V+A N  E+K+  +HH R
Sbjct: 2198 DIQQLERSIVNASNMKEEKMLKNHHSR 2224


>SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 229 NKRRMGLTEYDAVKEMYDGIAELIKIE 149
           N R +    YDAVK+ YD   ++  I+
Sbjct: 50  NNRNLAFKAYDAVKQKYDSSIKVFNIQ 76


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 174 PSYISLTASYSVSPMRRLLEMSYTPPSASV 263
           P+Y +LT +  VSP R     S   PSASV
Sbjct: 420 PNYANLTPTPQVSPKRPTYSRSSPLPSASV 449


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 390 VGQNVRKPSRSWCENGIFFSISLTALTSLLYTCCRSP 500
           +G  +R+ ++SW          +  LTS++Y+CC++P
Sbjct: 376 IGSLIRQLNKSW---------EVVFLTSVIYSCCKTP 403


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 390 VGQNVRKPSRSWCENGIFFSISLTALTSLLYTCCRSP-PICIEMMRR 527
           VG N+    +  CE G+  S S    +     CCR P   C+ ++ +
Sbjct: 65  VGSNLNIDGKVECEAGVMDSESGLTASVACCNCCRHPSEACLYILNK 111


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 174  PSYISLTASYSVSPMRRLLEMSYTPPSASVCSPRVP 281
            PSY   +  YS SP       SY+P S S  SP  P
Sbjct: 1556 PSYSPSSPGYSTSPAYMPSSPSYSPTSPSY-SPTSP 1590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,270
Number of Sequences: 5004
Number of extensions: 29024
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)