Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30020
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 188 2e-48
SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 188 3e-48
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 155 4e-38
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.) 145 2e-35
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 4e-35
SB_8314| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 121 6e-28
SB_26353| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.9e-18) 105 2e-23
SB_8138| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 103 1e-22
SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13) 50 2e-06
SB_54113| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0.11) 44 1e-04
SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34) 31 0.77
SB_21327| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 29 4.1
SB_56605| Best HMM Match : WD40 (HMM E-Value=2.5e-12) 29 4.1
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_11883| Best HMM Match : I-set (HMM E-Value=0) 28 7.1
SB_49317| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
>SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 969
Score = 188 bits (459), Expect = 2e-48
Identities = 85/165 (51%), Positives = 120/165 (72%), Gaps = 3/165 (1%)
Frame = -1
Query: 628 FLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEI 449
FL+AA + WP GRGI+HN +KTFLVW NEED LRIISM+MG D+ V+KRL +AVNEI
Sbjct: 454 FLEAAGVNKLWPEGRGIFHNNDKTFLVWVNEEDQLRIISMEMGSDIGSVFKRLCTAVNEI 513
Query: 448 EKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRG 269
+K++ F H + G+L+ CPTNLGT +RASVH+ +++ ++H+Q RG G
Sbjct: 514 DKQLGFQHTEEHGYLSSCPTNLGTGMRASVHV-KIPHASAHPDFQKICDEFHIQARGIHG 572
Query: 268 EH---TEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 143
EH T A+ GV+DISNKRR+GL+E V++MY+G+ +L++IE++
Sbjct: 573 EHSVSTGADAGVFDISNKRRLGLSEVQCVQDMYNGVKKLLEIERA 617
Score = 185 bits (451), Expect = 2e-47
Identities = 84/165 (50%), Positives = 119/165 (72%), Gaps = 3/165 (1%)
Frame = -1
Query: 628 FLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEI 449
FL+AA + WP GRGI+HN +KTFLVW NEED LRIISM+MG D+ V+ RL AVNEI
Sbjct: 806 FLEAAGVNKMWPEGRGIFHNNDKTFLVWVNEEDQLRIISMEMGSDIGSVFSRLCRAVNEI 865
Query: 448 EKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRG 269
+K++ F+H + G+L+ CPTNLGT +RASVH+ +++ ++H+Q RG G
Sbjct: 866 DKQLGFAHKETHGYLSGCPTNLGTGMRASVHV-KIPKASEHPDFQKICDEFHIQARGIHG 924
Query: 268 EHTEAEG---GVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 143
EH+ + G GV+DISNKRR+GL+E V++MY+G+ +L++IEK+
Sbjct: 925 EHSVSTGEDAGVFDISNKRRLGLSEVQCVQDMYNGVKKLLEIEKA 969
Score = 182 bits (442), Expect = 3e-46
Identities = 84/165 (50%), Positives = 117/165 (70%), Gaps = 3/165 (1%)
Frame = -1
Query: 628 FLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEI 449
FL+AA R WP GRGI+HN +KTFLVW NEED LRIISM+MG D+ V++RL +AVNE+
Sbjct: 22 FLEAAGVNREWPEGRGIFHNNDKTFLVWVNEEDQLRIISMEMGSDIGSVFRRLCTAVNEL 81
Query: 448 EKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRG 269
+ K+ F G+L+ CPTNLGT +RASVH+ +++ ++H+Q RG G
Sbjct: 82 DNKLGFQQLPGHGYLSSCPTNLGTGMRASVHV-KIPHASAHPDFQKICDEFHIQARGIHG 140
Query: 268 EH---TEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 143
EH T A+ GV+DISNKRR+GL+E V++MY+G+ +L++IEK+
Sbjct: 141 EHSVSTGADAGVFDISNKRRLGLSEVQCVQDMYNGVKKLLEIEKA 185
>SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 725
Score = 188 bits (458), Expect = 3e-48
Identities = 87/165 (52%), Positives = 115/165 (69%), Gaps = 3/165 (1%)
Frame = -1
Query: 628 FLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEI 449
FL AA + WP GRGI+HN KTFLVW NEED LRIISM+MG D+ V+ RL AVNE+
Sbjct: 182 FLDAAGCNKEWPEGRGIFHNNEKTFLVWVNEEDQLRIISMEMGSDIGSVFSRLCRAVNEL 241
Query: 448 EKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRG 269
+KK+ F H G+LT CPTNLGT +RASVH+ +++ K+H+Q RG G
Sbjct: 242 DKKLGFQHTKSHGYLTSCPTNLGTGMRASVHV-KIPHAKDHPEFDKICEKFHIQARGIHG 300
Query: 268 EHTEAEG---GVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 143
EH+E+ G GVYDISNKRR+GL+E V++MY+G+ L++IE++
Sbjct: 301 EHSESTGEDAGVYDISNKRRLGLSEVQCVQDMYNGVKSLLEIERA 345
Score = 184 bits (449), Expect = 4e-47
Identities = 84/165 (50%), Positives = 117/165 (70%), Gaps = 3/165 (1%)
Frame = -1
Query: 628 FLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEI 449
FL+AA + WP GRGI+HN +KTFLVW NEED LRIISM+ G D+ V+ RL AVNE+
Sbjct: 561 FLEAAGVNKLWPEGRGIFHNNDKTFLVWINEEDQLRIISMEKGSDIGSVFSRLCRAVNEL 620
Query: 448 EKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRG 269
+KK+ F H D G+L+ CPTNLGT +RASVH+ +++ ++H+Q RG G
Sbjct: 621 DKKLGFQHTDAHGYLSGCPTNLGTGMRASVHV-KIPKASEHPDFQKICDEFHIQARGIHG 679
Query: 268 EHTEAEG---GVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 143
EH+ + G GV+DISNKRR+GL+E V++MY+G+ +L++IEK+
Sbjct: 680 EHSVSTGEDAGVFDISNKRRLGLSEVQCVQDMYNGVKKLLEIEKA 724
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 155 bits (375), Expect = 4e-38
Identities = 76/167 (45%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
Frame = -1
Query: 625 LQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIE 446
L A R WP RGI+HNENK FLVW NEEDH R+ISM+ GGD++ V+ R + +N++E
Sbjct: 2494 LTCAGMARDWPDARGIWHNENKNFLVWVNEEDHTRVISMEKGGDMRAVFTRFCNGLNKVE 2553
Query: 445 KKIP-----FSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVR 281
I F ++ LG++ CP+NLGT +RA VH+ L+ + +K LQ R
Sbjct: 2554 SLIKEAGYEFMWNEHLGYVLTCPSNLGTGLRAGVHLKIPLLSQDEKRLDAILAKLKLQKR 2613
Query: 280 GTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
GT G T + GGVYDISN R+G +E + V+ M DG+ LI++EK L
Sbjct: 2614 GTGGVDTASVGGVYDISNADRIGFSEVELVQGMVDGVGLLIEMEKRL 2660
>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1115
Score = 145 bits (352), Expect = 2e-35
Identities = 71/167 (42%), Positives = 103/167 (61%), Gaps = 5/167 (2%)
Frame = -1
Query: 625 LQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIE 446
L A+ R WP RGI+HN+NKTFLVW NEEDH R+ISMQ GG++++V+ R + +N++E
Sbjct: 173 LLASRMARDWPDARGIWHNDNKTFLVWVNEEDHTRVISMQKGGNMKEVFTRFCNGLNKVE 232
Query: 445 KKI-----PFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVR 281
K I F + LG++ CP+NLGT +R VH+ + + LQ R
Sbjct: 233 KAIKSKGREFMWNKHLGYVLTCPSNLGTGLRGGVHV-KLPLLSKEPRFDSILRTLRLQKR 291
Query: 280 GTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
GT G T + G +DISN R+G +E + V+++ DG+ LI+IEK+L
Sbjct: 292 GTGGVDTASTDGTFDISNLDRLGTSEVEQVQKVIDGVKALIEIEKAL 338
Score = 140 bits (340), Expect = 6e-34
Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 5/167 (2%)
Frame = -1
Query: 625 LQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIE 446
L A+ R WP RGI+HN+NKTFLVW NEEDH R+ISMQ GG++++V+ R + +N++E
Sbjct: 542 LLASRMARDWPDARGIWHNDNKTFLVWVNEEDHTRVISMQKGGNMKEVFARFCNGLNKVE 601
Query: 445 -----KKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVR 281
K F ++ LG++ CP+NLGT +R VH+ + + LQ R
Sbjct: 602 SLIKSKGYEFMWNEHLGYVLTCPSNLGTGLRGGVHV-KLPLLSARDDFDSLLKALRLQKR 660
Query: 280 GTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
GT G T + G +DISN R+G +E + V+ + DG+ ++++EK+L
Sbjct: 661 GTGGVDTASTDGTFDISNADRLGTSEVEQVQTVVDGVKLMVELEKAL 707
Score = 134 bits (324), Expect = 6e-32
Identities = 67/167 (40%), Positives = 98/167 (58%), Gaps = 5/167 (2%)
Frame = -1
Query: 625 LQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIE 446
L +A R WP RGI+HN+ K FLVW NEEDH R+ISMQ GG++++V+ R + + +IE
Sbjct: 939 LLSARMARDWPDARGIWHNDAKNFLVWVNEEDHTRVISMQQGGNMREVFHRFCNGLKKIE 998
Query: 445 -----KKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVR 281
K F + LG++ CP+NLGT +R VH+ + + K LQ R
Sbjct: 999 DAMKAKGKEFMWDEHLGYVLTCPSNLGTGLRGGVHV-KLPMVSKDARFDGILEKLRLQKR 1057
Query: 280 GTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
GT G T + G +DISN R+G +E V+++ DG+ L+++EK L
Sbjct: 1058 GTGGVDTASTDGTFDISNLDRIGFSEVQLVQKVIDGVKILVEMEKKL 1104
>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 144 bits (350), Expect = 4e-35
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 5/167 (2%)
Frame = -1
Query: 625 LQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIE 446
L A R WP RGI+HN++K FL+W NEEDH R+ISMQ GGD++ V+ R +N++E
Sbjct: 234 LTCAGMARDWPDARGIWHNDSKNFLIWVNEEDHTRVISMQQGGDMRSVFDRFCRGLNQVE 293
Query: 445 KKIPFSHHD-----RLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVR 281
I H+ LG++ CP+NLGT +RA VH+ L+ + K LQ R
Sbjct: 294 GLIKKKGHEFMWNQHLGYILTCPSNLGTGLRAGVHV-KLPNLGKDKRLDTILDKLRLQKR 352
Query: 280 GTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
GT G T A GG +DISN R+G +E + V+++ DG+ LI +EK L
Sbjct: 353 GTGGVDTAAVGGTFDISNSDRLGYSEVELVQKVIDGVNLLIDMEKRL 399
>SB_8314| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 309
Score = 121 bits (291), Expect = 6e-28
Identities = 71/173 (41%), Positives = 96/173 (55%), Gaps = 11/173 (6%)
Frame = -1
Query: 625 LQAANACR-FWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEI 449
+QAA+ FWP GRGI+ N+ KTFL W NE DHLRIISM+MGGD++ V+ RL I
Sbjct: 131 MQAASGYHEFWPEGRGIFINKAKTFLNWINEGDHLRIISMEMGGDVKGVFTRLSRGAKAI 190
Query: 448 E--------KKIPFSHHDRLGFLTFCPTNLGTTVRASVHI--XXXXXXXXXXXLEEVASK 299
E K F H G +T CPTN+GT +R SVHI ++++ +
Sbjct: 191 EDGVKEATGAKDAFMMHPTFGSVTCCPTNIGTGMRGSVHILVPKLIAKIGFDAIDKICRE 250
Query: 298 YHLQVRGTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
+ Q RG+ GEH+E + D+SN RR+G EY V +M + L + E L
Sbjct: 251 RNCQARGSTGEHSEVIDRI-DVSNWRRIGFPEYQLVDDMIQCVNFLAEEEDKL 302
>SB_26353| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.9e-18)
Length = 138
Score = 105 bits (253), Expect = 2e-23
Identities = 44/89 (49%), Positives = 64/89 (71%), Gaps = 5/89 (5%)
Frame = -1
Query: 604 RFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIEKKI---- 437
R WP GRG++H ++K+FL+W NEEDHLR+ISM+ GGDL++ Y+R + E+E +I
Sbjct: 43 RDWPDGRGVWHTKDKSFLIWVNEEDHLRVISMETGGDLERTYERFYRGLKELESRIQKFG 102
Query: 436 -PFSHHDRLGFLTFCPTNLGTTVRASVHI 353
F + LG++ CP+NLGT +RASVH+
Sbjct: 103 HEFMRNRHLGYINTCPSNLGTGLRASVHV 131
>SB_8138| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 383
Score = 103 bits (247), Expect = 1e-22
Identities = 61/157 (38%), Positives = 85/157 (54%), Gaps = 10/157 (6%)
Frame = -1
Query: 580 IYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIE--------KKIPFSH 425
++ N+ KTFL W NE DHLRIISM+MGGD++ V+ RL IE K F
Sbjct: 221 VFINKAKTFLNWINEGDHLRIISMEMGGDVKGVFTRLSRGAKAIEDGVKEATGAKDAFMM 280
Query: 424 HDRLGFLTFCPTNLGTTVRASVHI--XXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAE 251
H G +T CPTN+GT +R SVHI ++++ + + Q RG+ GEH+E
Sbjct: 281 HPTFGSVTCCPTNIGTGMRGSVHILVPKLIAKIGFDAIDKICRERNCQARGSTGEHSEVI 340
Query: 250 GGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
+ D+SN RR+G EY V +M + L + E L
Sbjct: 341 DRI-DVSNWRRIGFPEYQLVDDMIQCVNFLAEEEDKL 376
>SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 73.7 bits (173), Expect = 1e-13
Identities = 30/50 (60%), Positives = 37/50 (74%)
Frame = -1
Query: 625 LQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYK 476
L A R WP RGI+HN+NK FLVW NEEDH R+ISMQ GGD++ V++
Sbjct: 575 LTCAGMARDWPDARGIWHNKNKNFLVWVNEEDHTRLISMQKGGDMRAVFE 624
>SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13)
Length = 490
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = -1
Query: 598 WPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIEKKIPFSHHD 419
W +GRGI+ + + NE +H+ ++ + GGDL + R+ V E + + H
Sbjct: 367 WSSGRGIWRDGTSNAIALVNEREHIIFLTQEFGGDLCHAFYRMRDLVERTELALEKTGHK 426
Query: 418 RL-----GFLTFCPTNLGTTVRASVHI 353
+ GFL P +GT +R SV++
Sbjct: 427 YMHSVVYGFLVSSPQEVGTGLRISVNV 453
>SB_54113| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0.11)
Length = 115
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = -1
Query: 271 GEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
G++T +YDISN R+G TE V+++ DG+ LIK+EK L
Sbjct: 58 GDNTPIREDIYDISNADRLGYTEVQLVQKVIDGVNLLIKMEKRL 101
>SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)
Length = 394
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = -3
Query: 509 ADGWRPAAGIQEAGERRQRDREEDPVLAPRPARLP 405
AD RPA G +E +R +RD++ED RPAR P
Sbjct: 258 ADQERPARGPRETSKRTKRDQQED---QERPARGP 289
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 512 DADGWRPAAGIQEAGERRQRDREEDPVLAPRPARLP 405
+ D RPA G ++ +R +RD++ED RPAR P
Sbjct: 117 EEDQERPAGGPRKTSKRTKRDQQED---QERPARGP 149
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -3
Query: 506 DGWRPAAGIQEAGERRQRDREED---PVLAPRPAR 411
D RPA G +E +R +RD++ED P PR R
Sbjct: 75 DQERPARGPRETSKRTKRDQQEDQERPAGRPRKTR 109
>SB_21327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = -1
Query: 520 IISMQMGGDLQQVYKRLVSAVNEIEKKIP-----FSHHDRLGFLTFCPTNLGTTVRASVH 356
+I G DL Y R ++++E+++ F+ D LG++ P +LGT + +
Sbjct: 1 VICWSQGSDLFDTYDRFQRGLSQLEEELKQNDEEFALSDHLGYIVSDPRHLGTAMEVRMR 60
Query: 355 I 353
+
Sbjct: 61 V 61
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 135 AYRDFSILMSSAMPSYISLTASYS-VSPMRRLLEMSYTP--PSASVCSP 272
+Y S S A PSY S + SYS SP SY+P PS S SP
Sbjct: 688 SYSPTSPSYSPASPSYTSASPSYSPASPSYSPTSPSYSPAIPSNSPASP 736
>SB_56605| Best HMM Match : WD40 (HMM E-Value=2.5e-12)
Length = 630
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -3
Query: 479 QEAGERRQRDREEDPVLAPRPARLPHVLPDQPGH 378
+++GE+ +RD ++P+ P +++P V GH
Sbjct: 189 RKSGEKMERDNNDNPMPPPTSSKMPRVNSMNVGH 222
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -3
Query: 485 GIQEAGERRQRDREEDPVLAPRPARLPHVLPDQ---PGHHGPRL 363
G+ E +R R P L P P ++P +LP Q PG G +L
Sbjct: 2338 GVMEVSHQRFALRHPAPGLPPPPQQVPGILPGQVPLPGVDGQQL 2381
>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 87 PASAER*INTQA-ARGGAYRDFSILMSSAMPSYISLTASYSVSPMR-RLLEMSYTPPSAS 260
P + + TQA A GG + I + +PS + T S+SP L S PP +
Sbjct: 706 PGTTPTLLITQAPASGGGFVVNGIAQAVVLPSSTATTVQVSLSPRSGSTLATSVIPPGSP 765
Query: 261 VCSP 272
V SP
Sbjct: 766 VRSP 769
>SB_11883| Best HMM Match : I-set (HMM E-Value=0)
Length = 616
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 469 VSAVNEIEKKIPFSHHDRLGFLTFCPTNLGT 377
VSA + +E K+PFS H TFC T+ +
Sbjct: 84 VSAKSNLEIKVPFSFHHPYICPTFCRTSFAS 114
>SB_49317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 129 GGAYRDFSILMSSAMPSYISLTASYSVSPMRRLLEMSYTPPSASV 263
GGA++ FS +SS++ S S T S + S + + + PP ++
Sbjct: 283 GGAFKAFSASVSSSISSSWSTTQSSTFSASKSVKHVLTIPPRTTI 327
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,385,507
Number of Sequences: 59808
Number of extensions: 241229
Number of successful extensions: 785
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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