Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30018
(894 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O75306 Cluster: NADH dehydrogenase [ubiquinone] iron-su... 421 e-117
UniRef50_P93306 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 354 2e-96
UniRef50_Q4P4N9 Cluster: Putative uncharacterized protein; n=1; ... 332 5e-90
UniRef50_A7DLV5 Cluster: NADH dehydrogenase; n=1; Methylobacteri... 297 3e-79
UniRef50_Q9PGJ2 Cluster: NADH-ubiquinone oxidoreductase, NQO4 su... 265 1e-69
UniRef50_P15689 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 257 2e-67
UniRef50_A3ERJ4 Cluster: NADH ubiquinone oxidoreductase subunit ... 250 5e-65
UniRef50_P56908 Cluster: NADH-quinone oxidoreductase subunit D 2... 233 6e-60
UniRef50_A6FCN3 Cluster: NuoD2 NADH I CHAIN D; n=1; Moritella sp... 224 3e-57
UniRef50_Q9PM99 Cluster: NADH-quinone oxidoreductase subunit D; ... 221 2e-56
UniRef50_Q1IS59 Cluster: NADH dehydrogenase I, D subunit; n=2; A... 219 6e-56
UniRef50_O66826 Cluster: NADH dehydrogenase I chain D; n=4; Aqui... 219 1e-55
UniRef50_A7CUG2 Cluster: NADH dehydrogenase I, D subunit; n=1; O... 215 2e-54
UniRef50_Q8KEC0 Cluster: NADH dehydrogenase I, 49 kDa subunit; n... 214 3e-54
UniRef50_Q2S5J0 Cluster: NADH dehydrogenase I, D subunit; n=4; B... 210 5e-53
UniRef50_A3ZL03 Cluster: NADH dehydrogenase; n=1; Blastopirellul... 209 6e-53
UniRef50_Q67KN9 Cluster: NADH dehydrogenase I subunit D; n=19; F... 207 3e-52
UniRef50_Q1AVI6 Cluster: NADH dehydrogenase; n=1; Rubrobacter xy... 205 1e-51
UniRef50_Q979M3 Cluster: NADH dehydrogenase I chain D; n=6; Ther... 200 3e-50
UniRef50_Q56220 Cluster: NADH-quinone oxidoreductase subunit 4; ... 200 3e-50
UniRef50_Q5DUX5 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 198 2e-49
UniRef50_Q67P19 Cluster: NADH dehydrogenase I subunit D; n=1; Sy... 197 3e-49
UniRef50_A7H9U8 Cluster: NADH dehydrogenase; n=2; Anaeromyxobact... 196 5e-49
UniRef50_Q6MIR5 Cluster: NADH dehydrogenase I,D subunit; n=1; Bd... 196 6e-49
UniRef50_P56753 Cluster: NAD(P)H-quinone oxidoreductase chain H,... 196 6e-49
UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits; n... 196 8e-49
UniRef50_A7H9V5 Cluster: NADH dehydrogenase; n=4; Cystobacterine... 193 4e-48
UniRef50_A5UXK3 Cluster: NADH dehydrogenase; n=3; Chloroflexi (c... 192 1e-47
UniRef50_Q3ZXR8 Cluster: Proton-translocating NADH-quinone oxido... 191 2e-47
UniRef50_P65570 Cluster: NADH-quinone oxidoreductase subunit D; ... 191 2e-47
UniRef50_A4XCQ7 Cluster: NADH dehydrogenase; n=5; Actinomycetale... 188 1e-46
UniRef50_Q6MDR3 Cluster: Putative NADH-ubiquinone oxidoreductase... 184 3e-45
UniRef50_A1ALP2 Cluster: NADH dehydrogenase; n=1; Pelobacter pro... 180 3e-44
UniRef50_P0A1Y6 Cluster: NADH-quinone oxidoreductase subunit C/D... 179 1e-43
UniRef50_Q190M8 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 175 1e-42
UniRef50_Q9P9G0 Cluster: F420H2 dehydrogenase subunit FpoD; n=6;... 172 9e-42
UniRef50_Q8A0F6 Cluster: NADH dehydrogenase I, chain D; n=8; Bac... 171 2e-41
UniRef50_A0RMD1 Cluster: NADH-quinone oxidoreductase chain c/d; ... 170 5e-41
UniRef50_Q2C5T4 Cluster: NADH dehydrogenase I, B/C/D subunits; n... 168 1e-40
UniRef50_P21301 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 167 3e-40
UniRef50_Q8F7Q2 Cluster: NADH dehydrogenase I, D subunit; n=8; B... 166 8e-40
UniRef50_Q1K3R4 Cluster: NADH dehydrogenase; n=4; Deltaproteobac... 162 9e-39
UniRef50_UPI00015BB164 Cluster: NADH-ubiquinone oxidoreductase, ... 157 5e-37
UniRef50_Q9HRL9 Cluster: NADH dehydrogenase/oxidoreductase; n=6;... 155 1e-36
UniRef50_A0RY68 Cluster: NADH-ubiquinone oxidoreductase, subunit... 149 1e-34
UniRef50_Q9X0U3 Cluster: NADH dehydrogenase, 49 kDa subunit, put... 141 2e-32
UniRef50_Q9YC29 Cluster: NuoD homolog; n=4; Thermoprotei|Rep: Nu... 136 5e-31
UniRef50_A7C1S4 Cluster: NADH-ubiquinone oxidoreductase subunit;... 136 7e-31
UniRef50_Q8ZWW9 Cluster: NADH-ubiquinone oxidoreductase subunit;... 136 7e-31
UniRef50_A6Q8J5 Cluster: NADH-quinone oxidoreductase, chain D; n... 134 3e-30
UniRef50_Q980H3 Cluster: NADH dehydrogenase subunit D; n=2; Sulf... 134 3e-30
UniRef50_O28445 Cluster: F420H2:quinone oxidoreductase, 45 kDa s... 131 3e-29
UniRef50_A0L9R4 Cluster: NADH dehydrogenase; n=2; Bacteria|Rep: ... 130 6e-29
UniRef50_A1RZ50 Cluster: NADH dehydrogenase; n=1; Thermofilum pe... 130 6e-29
UniRef50_A1RZ40 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 127 4e-28
UniRef50_Q0W3I1 Cluster: Ech hydrogenase, subunit E; n=1; uncult... 125 2e-27
UniRef50_A3DM94 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 124 2e-27
UniRef50_Q9V0S5 Cluster: NuoD NADH dehydrognease I, subunit D; n... 112 1e-23
UniRef50_Q57935 Cluster: Uncharacterized protein MJ0515; n=9; Eu... 112 1e-23
UniRef50_Q8RDB4 Cluster: NADH:ubiquinone oxidoreductase 49 kD su... 111 3e-23
UniRef50_A7I491 Cluster: NADH dehydrogenase; n=2; cellular organ... 108 2e-22
UniRef50_Q8U0Z6 Cluster: Mbh12 membrane bound hydrogenase alpha;... 103 8e-21
UniRef50_P31895 Cluster: Carbon monoxide-induced hydrogenase; n=... 101 2e-20
UniRef50_A3DKH4 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 99 8e-20
UniRef50_A1AUU6 Cluster: NADH dehydrogenase (Ubiquinone) precurs... 97 4e-19
UniRef50_Q2FTW4 Cluster: NADH dehydrogenase; n=2; Methanomicrobi... 97 4e-19
UniRef50_Q0W6T4 Cluster: [NiFe]-hydrogenase, large subunit; n=1;... 96 1e-18
UniRef50_A6DBV4 Cluster: Ech hydrogenase, subunit EchE, putative... 95 2e-18
UniRef50_A2Q588 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 94 4e-18
UniRef50_A3CUR5 Cluster: NADH dehydrogenase; n=3; Methanomicrobi... 94 5e-18
UniRef50_A3DNE9 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 93 9e-18
UniRef50_P16431 Cluster: Formate hydrogenlyase subunit 5 precurs... 93 9e-18
UniRef50_A1RWL3 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 93 1e-17
UniRef50_Q9UYN4 Cluster: Hydrogenase 4, component G or formate h... 91 3e-17
UniRef50_Q8TY43 Cluster: Ni,Fe-hydrogenase III large subunit; n=... 89 2e-16
UniRef50_Q0W2B9 Cluster: Hydrogenase, large subunit-like protein... 87 8e-16
UniRef50_Q6AB32 Cluster: Putative NADH dehydrogenase; n=1; Propi... 86 1e-15
UniRef50_P77329 Cluster: Hydrogenase-4 component G; n=19; Bacter... 85 2e-15
UniRef50_Q2RXM4 Cluster: NADH-ubiquinone oxidoreductase; n=1; Rh... 83 1e-14
UniRef50_Q1PZL4 Cluster: Similar to membrane-bound [NiFe]-hydrog... 82 2e-14
UniRef50_Q24ST8 Cluster: Formate hydrogenlyase subunit 5; n=2; D... 76 1e-12
UniRef50_A1ASR5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 76 1e-12
UniRef50_Q3ZW31 Cluster: Hydrogenase, group 4, HycE subunit; n=3... 75 2e-12
UniRef50_Q0BPG8 Cluster: Formate hydrogenlyase subunit 5; n=1; G... 75 3e-12
UniRef50_A0UXP1 Cluster: NADH dehydrogenase; n=1; Clostridium ce... 73 8e-12
UniRef50_Q10884 Cluster: POSSIBLE FORMATE HYDROGENASE HYCE; n=10... 73 1e-11
UniRef50_Q58433 Cluster: Uncharacterized protein MJ1027; n=6; Me... 73 1e-11
UniRef50_Q0F384 Cluster: Hydrogenase subunit; n=1; Mariprofundus... 72 2e-11
UniRef50_UPI00015BC86A Cluster: UPI00015BC86A related cluster; n... 71 4e-11
UniRef50_Q8THY6 Cluster: Hydrogenase-3, subunit E; n=4; Methanom... 69 1e-10
UniRef50_Q9V2X7 Cluster: Hydrogenase large subunit; n=4; Methano... 69 1e-10
UniRef50_Q89GK2 Cluster: Blr6343 protein; n=11; Alphaproteobacte... 67 5e-10
UniRef50_A5FW46 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 65 3e-09
UniRef50_Q0LPD5 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 64 5e-09
UniRef50_Q3JMD7 Cluster: Hydrogenase subunit; n=8; pseudomallei ... 63 1e-08
UniRef50_UPI000155B933 Cluster: PREDICTED: similar to NADH dehyd... 61 3e-08
UniRef50_Q609T9 Cluster: Hydrogenase subunit; n=1; Methylococcus... 59 2e-07
UniRef50_A0H1B0 Cluster: Ni Fe-hydrogenase III large subunit-lik... 57 5e-07
UniRef50_A6UVJ6 Cluster: Hydrogenase, component E-formate hydrog... 57 5e-07
UniRef50_Q6APF2 Cluster: Related to hydrogenase, component E-for... 57 7e-07
UniRef50_Q5P2H0 Cluster: Subunit of formate hydrogenlyase-like m... 56 9e-07
UniRef50_A3ETD4 Cluster: Ni,Fe-hydrogenase III large subunit; n=... 54 4e-06
UniRef50_Q8EYD9 Cluster: Hydrogenase-3 component E; n=4; Leptosp... 54 6e-06
UniRef50_A0LSU1 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 52 2e-05
UniRef50_A7HGW8 Cluster: NADH-ubiquinone oxidoreductase chain 49... 51 5e-05
UniRef50_A5UWP3 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 50 6e-05
UniRef50_Q4X2T6 Cluster: Putative uncharacterized protein; n=1; ... 43 0.009
UniRef50_Q97ZA7 Cluster: Formate hydrogenlyase subunit 5; n=2; S... 43 0.012
UniRef50_A6Q6W4 Cluster: Ni-Fe hydrogenase, large subunit HycE; ... 42 0.016
UniRef50_Q97TG0 Cluster: Periplasmic hydrogenase large subunit, ... 41 0.049
UniRef50_P33374 Cluster: Uptake hydrogenase large subunit; n=22;... 41 0.049
UniRef50_Q978D6 Cluster: Formate hydrogenlyase subunit 3; n=1; T... 40 0.11
UniRef50_P0ACE2 Cluster: Hydrogenase-2 large chain precursor; n=... 38 0.26
UniRef50_UPI000038DF6E Cluster: hypothetical protein Faci_030016... 38 0.35
UniRef50_O66895 Cluster: Hydrogenase large subunit; n=5; Bacteri... 38 0.46
UniRef50_Q6L0U1 Cluster: Formate hydrogenlyase subunit 5; n=1; P... 37 0.80
UniRef50_A4M0W7 Cluster: Nickel-dependent hydrogenase, large sub... 36 1.1
UniRef50_A6DBU3 Cluster: Nickel-dependent hydrogenase, large sub... 35 2.4
UniRef50_A4M324 Cluster: Nickel-dependent hydrogenase, large sub... 35 2.4
UniRef50_UPI000155602C Cluster: PREDICTED: similar to pericentri... 34 4.3
UniRef50_Q4DZG8 Cluster: Putative uncharacterized protein; n=2; ... 33 7.4
UniRef50_A4WKM9 Cluster: Methyltransferase type 11; n=4; Pyrobac... 33 7.4
UniRef50_A3H5B9 Cluster: Endonuclease V; n=1; Caldivirga maquili... 33 7.4
UniRef50_Q9H7P9 Cluster: Pleckstrin homology domain-containing f... 33 9.8
>UniRef50_O75306 Cluster: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 2, mitochondrial precursor; n=305;
cellular organisms|Rep: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 2, mitochondrial precursor - Homo
sapiens (Human)
Length = 463
Score = 421 bits (1038), Expect = e-117
Identities = 196/267 (73%), Positives = 221/267 (82%)
Frame = +3
Query: 93 VNSQRDGHRWFPDPDFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRNMILNFGPQ 272
+ R +W PD ++ +QF G VMYP + T KP P+N + P + V+N+ LNFGPQ
Sbjct: 28 IQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGPQ 87
Query: 273 HPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCN 452
HPAAHGVLRLV+EL GE VR DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCN
Sbjct: 88 HPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCN 147
Query: 453 EQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEER 632
EQ YSLAVEKLLNI P RA++IR LF EITRLLNHIMAV THALD+GA+TPFFWLFEER
Sbjct: 148 EQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEER 207
Query: 633 EKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRI 812
EKM EFYERVSGARMHAAYIRPGGV D+PLGLMDDIY+FS F+ R+DE+E++LT NRI
Sbjct: 208 EKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRI 267
Query: 813 WVQRTKDIGVVTAQDALNYGFSGVMLR 893
W RT DIGVVTA++ALNYGFSGVMLR
Sbjct: 268 WRNRTIDIGVVTAEEALNYGFSGVMLR 294
>UniRef50_P93306 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=37; cellular organisms|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Arabidopsis thaliana
(Mouse-ear cress)
Length = 394
Score = 354 bits (870), Expect = 2e-96
Identities = 162/221 (73%), Positives = 190/221 (85%)
Frame = +3
Query: 231 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 410
+++++N LNFGPQHPAAHGVLRLVLE++GE V A+PHIGLLHRGTEKLIEYKTY QAL
Sbjct: 5 KRQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAL 64
Query: 411 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 590
PYFDR DYVSMM E YSLAVEKLLN +VPLRA+YIR LF EITR+LNH++A+ THA+D
Sbjct: 65 PYFDRSDYVSMMAQEHAYSLAVEKLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMD 124
Query: 591 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAE 770
VGALTPF W FEEREK++EFYERVSGARMHA++IRPGGV+ D+PLGL DI F+ +FA
Sbjct: 125 VGALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFAS 184
Query: 771 RIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
RIDE+E++LT NRIW QR DIG VTAQ A ++GFSGVMLR
Sbjct: 185 RIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLR 225
>UniRef50_Q4P4N9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 498
Score = 332 bits (817), Expect = 5e-90
Identities = 160/247 (64%), Positives = 193/247 (78%), Gaps = 26/247 (10%)
Frame = +3
Query: 231 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAAD----------------------- 341
++ +R+ +NFGPQHPAAHGVLRL+LEL+GE + D
Sbjct: 83 DRSLRHFTVNFGPQHPAAHGVLRLILELNGEEILRTDLAICKANIADSIQSCLFWPSGVC 142
Query: 342 ---PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRA 512
PH+GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE CYS AVEKLLNI+VP RA
Sbjct: 143 ILQPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPERA 202
Query: 513 KYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 692
K+IRT+F EITR+LNH MAV +H +DVG LTPF W FEEREK+MEFYERVSGAR+HAAY+
Sbjct: 203 KWIRTMFGEITRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLMEFYERVSGARLHAAYV 262
Query: 693 RPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYG 872
RPGGV+ D+P GL+DDI++++++F R+DE+E+V+T NRIW RT IG VTAQ+AL+YG
Sbjct: 263 RPGGVAYDLPPGLLDDIHKWATQFGSRVDEIEEVVTGNRIWKGRTIGIGKVTAQEALDYG 322
Query: 873 FSGVMLR 893
FSGVMLR
Sbjct: 323 FSGVMLR 329
>UniRef50_A7DLV5 Cluster: NADH dehydrogenase; n=1; Methylobacterium
extorquens PA1|Rep: NADH dehydrogenase -
Methylobacterium extorquens PA1
Length = 447
Score = 297 bits (728), Expect = 3e-79
Identities = 138/221 (62%), Positives = 170/221 (76%)
Frame = +3
Query: 231 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 410
E +RN +NFGPQHPAAHGVLRLVLELDGE V DPHIGLLHRGTEKLIE+KTY QA
Sbjct: 24 EHNIRNFSINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQAT 83
Query: 411 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 590
PYFDRLDYV+ M E + LA+E+L I+VP RA+ IRTLF EI RLL+H++ V T A+D
Sbjct: 84 PYFDRLDYVAPMNQEHAFCLAIERLAGIEVPRRAQLIRTLFCEIGRLLSHLLNVTTQAMD 143
Query: 591 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAE 770
VGALTP W FEEREK+M FYER SGAR+HA Y RPGGV D+P L+DDI F F +
Sbjct: 144 VGALTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPPALIDDIEAFCDPFLK 203
Query: 771 RIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+D++++++ NRI+ QR DIG+V+ +A+ +GFSGVM+R
Sbjct: 204 VVDDLDNLVMANRIFKQRNVDIGIVSVDEAMAWGFSGVMVR 244
>UniRef50_Q9PGJ2 Cluster: NADH-ubiquinone oxidoreductase, NQO4
subunit; n=105; Proteobacteria|Rep: NADH-ubiquinone
oxidoreductase, NQO4 subunit - Xylella fastidiosa
Length = 435
Score = 265 bits (649), Expect = 1e-69
Identities = 138/261 (52%), Positives = 171/261 (65%), Gaps = 27/261 (10%)
Frame = +3
Query: 192 LKPVPYNSIIKPAEKK--VRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHR 365
++ P S E K +RN +NFGPQHPAAHGVLRL+LE+DGETV ADPHIGLLHR
Sbjct: 4 IRQAPATSASNATESKQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHR 63
Query: 366 GTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEIT 545
GTEKL E K + Q++ Y DRLDYVSMMCNE Y A+E L+ I P RA+YIRT+F EIT
Sbjct: 64 GTEKLAESKPFNQSIGYMDRLDYVSMMCNEHAYVRAIETLIGIQAPERAQYIRTMFDEIT 123
Query: 546 RLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMP- 722
R+LNH+M +G++ALD+GA+ + F ERE++M+ YE +SGARMHAAY RPGGV D+P
Sbjct: 124 RILNHLMWLGSNALDLGAMAVMLYAFREREELMDVYEAISGARMHAAYYRPGGVYRDLPD 183
Query: 723 -----------------------LGLMDDIYE-FSSKFAERIDEVEDVLTTNRIWVQRTK 830
G M D E F+ F +RIDE E +LT NRIW QRT
Sbjct: 184 TMPKYKQSRWHKGKALKRLNAAREGSMLDFLEHFADTFPQRIDEYETLLTDNRIWKQRTV 243
Query: 831 DIGVVTAQDALNYGFSGVMLR 893
+GV+ A +G +GVMLR
Sbjct: 244 GVGVIEPDVAKAWGMTGVMLR 264
>UniRef50_P15689 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=9; Intramacronucleata|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Paramecium tetraurelia
Length = 400
Score = 257 bits (630), Expect = 2e-67
Identities = 118/220 (53%), Positives = 163/220 (74%), Gaps = 2/220 (0%)
Frame = +3
Query: 240 VRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF 419
++ + +NFGPQHPAAHGVLRL+L+L+GE V D HIGLLHRG+EKL+E K Y Q++PYF
Sbjct: 1 MKAICVNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETKPYLQSMPYF 60
Query: 420 DRLDYVSMMCNEQCYSLAVEKLLN-IDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 596
DRLDYVSMM E Y LA+E LLN + +RT+F E+TR+LNH++A+ HALD+G
Sbjct: 61 DRLDYVSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALDIG 120
Query: 597 ALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLD-MPLGLMDDIYEFSSKFAER 773
+++ FW FEEREK+MEFYERV G RMHAA+ RP V+L+ + + L+ DI EF++
Sbjct: 121 SMSSIFWAFEEREKIMEFYERVCGRRMHAAFYRPNEVNLNFLSVKLLTDILEFNNNCLTT 180
Query: 774 IDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ E+ ++LT N+IW QR +IG ++ +D L++G +GVM R
Sbjct: 181 LSEMHNILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMAR 220
>UniRef50_A3ERJ4 Cluster: NADH ubiquinone oxidoreductase subunit 7;
n=2; Leptospirillum|Rep: NADH ubiquinone oxidoreductase
subunit 7 - Leptospirillum sp. Group II UBA
Length = 423
Score = 250 bits (611), Expect = 5e-65
Identities = 110/214 (51%), Positives = 154/214 (71%)
Frame = +3
Query: 252 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 431
+LN GPQHP+ HGVLR++LELDGE ++ + P +G LHRGTEK+ EY+TY Q +P DRLD
Sbjct: 41 LLNMGPQHPSTHGVLRVLLELDGERIKRSVPDLGYLHRGTEKIAEYRTYNQIIPLTDRLD 100
Query: 432 YVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPF 611
YVS M N + VEKLL + VP RA+++RT+ AE+ R++NH+ +GT ALD+GA++ F
Sbjct: 101 YVSAMANNYAFVRTVEKLLQLKVPDRAEFVRTIVAEVQRIVNHLFWLGTQALDIGAMSVF 160
Query: 612 FWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVED 791
F+ F ERE++++ +E + GAR+ Y R GGV DMP ++D +Y+F F E I E
Sbjct: 161 FYTFREREELLDIFEILCGARLTTNYYRVGGVESDMPQHVIDRLYKFVETFEEHIQEYNT 220
Query: 792 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+L TNRIW+ RTK+I V+T +DA+N+G SG LR
Sbjct: 221 LLETNRIWLARTKNIAVITGEDAINFGLSGPTLR 254
>UniRef50_P56908 Cluster: NADH-quinone oxidoreductase subunit D 2;
n=4; Bacteria|Rep: NADH-quinone oxidoreductase subunit D
2 - Rhizobium meliloti (Sinorhizobium meliloti)
Length = 404
Score = 233 bits (569), Expect = 6e-60
Identities = 107/217 (49%), Positives = 146/217 (67%)
Frame = +3
Query: 243 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 422
+ ++LN GPQHP+ HGVLRLVL+LDGE V DPHIG LHRGTEKL E TYTQ P D
Sbjct: 18 KEVLLNLGPQHPSTHGVLRLVLQLDGEYVERVDPHIGYLHRGTEKLAESFTYTQIFPLTD 77
Query: 423 RLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGAL 602
RLDY+ N ++LAVEKLL I+ P+RA+YIR + AE+ R+ H++ G +D+GA+
Sbjct: 78 RLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPMDLGAM 137
Query: 603 TPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDE 782
T + ERE +M+ E ++GARMH +Y R GGV D+P G + I EF F RI +
Sbjct: 138 TALLYAMREREMIMDLLEMITGARMHTSYCRVGGVREDLPDGFLPKIREFCEIFPNRIRD 197
Query: 783 VEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
E ++ NR+++ RT+ +GV++A DA++ G SG LR
Sbjct: 198 YERLIENNRVFLSRTQGVGVISATDAIDLGLSGPNLR 234
>UniRef50_A6FCN3 Cluster: NuoD2 NADH I CHAIN D; n=1; Moritella sp.
PE36|Rep: NuoD2 NADH I CHAIN D - Moritella sp. PE36
Length = 405
Score = 224 bits (547), Expect = 3e-57
Identities = 103/217 (47%), Positives = 145/217 (66%)
Frame = +3
Query: 243 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 422
R +++N GPQHP+ HGVLRL+L++DGE V+ +PHIGLLHRGTEKL E TYTQ P D
Sbjct: 18 REVLMNLGPQHPSTHGVLRLLLQMDGEIVKRIEPHIGLLHRGTEKLCESFTYTQIFPLTD 77
Query: 423 RLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGAL 602
RLDY+ N Y+LAVE LL I P RA+YIR L AE++R+ H++ G +DVGA+
Sbjct: 78 RLDYLCQPSNNLGYALAVEALLGIKAPERAQYIRVLMAELSRISGHLLITGALPMDVGAI 137
Query: 603 TPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDE 782
T + +RE +M+ E +SGARMH ++ R GGV D+P G ++ I EF F I +
Sbjct: 138 TTLLYTMRDREMIMDLMEMISGARMHTSFCRVGGVREDLPDGCVERIIEFCDIFENSISD 197
Query: 783 VEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
E+++ NR+++ R +++G +T +DA+ G SG LR
Sbjct: 198 YENLVGNNRVFLARVENVGNITGEDAIALGLSGPCLR 234
>UniRef50_Q9PM99 Cluster: NADH-quinone oxidoreductase subunit D;
n=24; Epsilonproteobacteria|Rep: NADH-quinone
oxidoreductase subunit D - Campylobacter jejuni
Length = 408
Score = 221 bits (540), Expect = 2e-56
Identities = 105/234 (44%), Positives = 152/234 (64%)
Frame = +3
Query: 192 LKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGT 371
LKP N + + K MI+N GPQHP+AHG LRL+LELDGE V A P IG +HRG
Sbjct: 7 LKPYYENIAFEQEDSK---MIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGM 63
Query: 372 EKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRL 551
EK+ E Y + +P DR+DY++ N Y AVEKL +++P RA IR + E+ R+
Sbjct: 64 EKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRI 123
Query: 552 LNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGL 731
+H++ + THALD+GA++ F + F ERE +++ E+ GAR+ + +R GGV LD+P
Sbjct: 124 TSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENY 183
Query: 732 MDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
++++ F KF + + ED+L NRIW RT+++GVVT + ALN+G +GVMLR
Sbjct: 184 LEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENVGVVTKEQALNWGCTGVMLR 237
>UniRef50_Q1IS59 Cluster: NADH dehydrogenase I, D subunit; n=2;
Acidobacteria|Rep: NADH dehydrogenase I, D subunit -
Acidobacteria bacterium (strain Ellin345)
Length = 381
Score = 219 bits (536), Expect = 6e-56
Identities = 100/215 (46%), Positives = 144/215 (66%)
Frame = +3
Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
++LN GPQHP+ HGVLR++L+LDGE V + IG LHRG EK+ E +TY Q PY DR+
Sbjct: 23 LVLNMGPQHPSTHGVLRVILKLDGERVLGTECVIGYLHRGVEKIAENRTYVQFNPYVDRM 82
Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
DYV+ + N Y AVEKL+++ P RA+++R + E+ RL +H++ +GTHALD+GALTP
Sbjct: 83 DYVAAVSNGLGYCEAVEKLIDVQAPPRAQFLRVILTELNRLASHMVWLGTHALDIGALTP 142
Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
F+ F +RE++++ +E+ GAR+ R GG + G D+ ++ K RIDE E
Sbjct: 143 LFYTFRDREEVLKIFEKYCGARLTTHAFRIGGCIYEAYEGFEKDVLDYCDKLGPRIDEYE 202
Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+LT NRIW+QRTK IG++ A D G +G +LR
Sbjct: 203 GLLTGNRIWLQRTKGIGILNAADCKALGVTGPVLR 237
>UniRef50_O66826 Cluster: NADH dehydrogenase I chain D; n=4; Aquifex
aeolicus|Rep: NADH dehydrogenase I chain D - Aquifex
aeolicus
Length = 593
Score = 219 bits (534), Expect = 1e-55
Identities = 97/222 (43%), Positives = 155/222 (69%), Gaps = 2/222 (0%)
Frame = +3
Query: 234 KKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 413
KK ++LN+GP HP HG + + +L+GE + D +G LHRG EKL E++ Y Q L
Sbjct: 214 KKKAQIVLNWGPLHPGTHGTMWFLFDLEGERIVQTDVILGQLHRGVEKLAEHEMYNQFLV 273
Query: 414 YFDRLDYVSMMCNEQCYSLAVEKLLNID--VPLRAKYIRTLFAEITRLLNHIMAVGTHAL 587
Y DR+DY+S +C+ Q + +A+E+L+ I VP +AKYIRT+ +E+ R+ +H++ +GT+AL
Sbjct: 274 YTDRMDYLSALCSNQAWVVAIERLMGIHDKVPPKAKYIRTMMSELQRINSHLLWLGTYAL 333
Query: 588 DVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFA 767
D+GALT F + F+EREK+M+ E ++GAR+ +Y R GGV +D+P G ++ I F KF
Sbjct: 334 DLGALTIFLYAFKEREKIMDIIEGITGARLTISYPRIGGVRMDLPEGALEVIKAFIKKFP 393
Query: 768 ERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
E + + E +LT NRIW++R K++G+++ +DA +G +G ++R
Sbjct: 394 EELKDWETILTRNRIWLRRNKEVGIISKEDAYFHGVTGPVIR 435
>UniRef50_A7CUG2 Cluster: NADH dehydrogenase I, D subunit; n=1;
Opitutaceae bacterium TAV2|Rep: NADH dehydrogenase I, D
subunit - Opitutaceae bacterium TAV2
Length = 419
Score = 215 bits (524), Expect = 2e-54
Identities = 99/243 (40%), Positives = 155/243 (63%), Gaps = 1/243 (0%)
Frame = +3
Query: 168 YPDESTKSLKPVPYNSIIKP-AEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADP 344
+PD + ++ + + + A M ++ GP HP+ HGVLRL LELDGE V DP
Sbjct: 7 FPDAAARTTAHAAGDPLFQTIAASDDEKMSISMGPSHPSTHGVLRLQLELDGEIVTKCDP 66
Query: 345 HIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIR 524
IG LHRG EK+ E TY Q +PY DRLDY++ + N Y++AVE+L ++VP R + IR
Sbjct: 67 VIGYLHRGDEKIAENMTYNQFVPYTDRLDYLAPLANNVAYAIAVERLAGLEVPARCQAIR 126
Query: 525 TLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGG 704
+ AE+ R+ +H++ G+ A+D G+ T F + F EREK+ + +E ++GAR +Y R GG
Sbjct: 127 VIVAELARISSHLLGFGSFAMDTGSWTAFMYQFNEREKLYKLFEELTGARFTTSYTRIGG 186
Query: 705 VSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGV 884
++ D+P G + + F +F ++E+ +LT NRI++ RT+ +GV++ +DAL+YG +G
Sbjct: 187 LARDVPEGWIQRVDAFCDQFLPLLEEMLGLLTRNRIFIDRTEGVGVISREDALSYGLTGP 246
Query: 885 MLR 893
LR
Sbjct: 247 NLR 249
>UniRef50_Q8KEC0 Cluster: NADH dehydrogenase I, 49 kDa subunit;
n=12; Bacteroidetes/Chlorobi group|Rep: NADH
dehydrogenase I, 49 kDa subunit - Chlorobium tepidum
Length = 368
Score = 214 bits (522), Expect = 3e-54
Identities = 101/215 (46%), Positives = 145/215 (67%)
Frame = +3
Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
M+L+ GPQHP+ HGVLRL DGE V A+P++G LHR EK E Y +PY DR+
Sbjct: 1 MVLSMGPQHPSTHGVLRLECITDGEVVVEAEPYLGYLHRCFEKHCEKIDYPAIVPYTDRM 60
Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
DY++ M NE Y + VEKLL+I++P R ++IR + AE+ R+ +H++A+GT+A+D+GA TP
Sbjct: 61 DYLAGMNNELAYCITVEKLLDIEIPRRVEFIRVIVAELNRIASHLVAIGTYAIDLGAFTP 120
Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
F + F +RE +M E +SGARM YI GG++ D+P + EF + F + E+
Sbjct: 121 FLFCFRDREHIMSLLEWISGARMLYNYIWIGGLAYDVPADFKTRVAEFVTYFRPKAKELY 180
Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+LT N I+V+RT DIG++ A A+NYG+SG MLR
Sbjct: 181 QLLTENEIFVKRTYDIGIMPADVAINYGWSGPMLR 215
>UniRef50_Q2S5J0 Cluster: NADH dehydrogenase I, D subunit; n=4;
Bacteria|Rep: NADH dehydrogenase I, D subunit -
Salinibacter ruber (strain DSM 13855)
Length = 451
Score = 210 bits (512), Expect = 5e-53
Identities = 103/232 (44%), Positives = 148/232 (63%)
Frame = +3
Query: 198 PVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEK 377
P S + P E + MILN GPQHPA HGVLR V+++DGET+ + IG LHRG EK
Sbjct: 53 PATQRSEVDPLENE---MILNIGPQHPATHGVLRCVVKMDGETIEKSVLDIGYLHRGIEK 109
Query: 378 LIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLN 557
L E+KTY + +PY DR+DY+S N + LAVEKL +I+VP RA++IR + +E+ R+ +
Sbjct: 110 LAEHKTYQEFMPYTDRMDYLSPYSNNVAWCLAVEKLADIEVPERAQWIRMIMSELARISS 169
Query: 558 HIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMD 737
H + +G +D GA++ F W F+ERE++ + V+GAR ++ R GGV+ D ++
Sbjct: 170 HCLWLGVGMMDAGAVSGFVWTFQEREEIYSIMDEVAGARFTVSHSRIGGVANDFSPRAIE 229
Query: 738 DIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
I +F F +RI E +L NRIWV+R K +G VT ++AL G +G LR
Sbjct: 230 MIRDFVDTFPDRIAGWEGLLNKNRIWVERNKGVGRVTKEEALELGLTGPNLR 281
>UniRef50_A3ZL03 Cluster: NADH dehydrogenase; n=1; Blastopirellula
marina DSM 3645|Rep: NADH dehydrogenase -
Blastopirellula marina DSM 3645
Length = 418
Score = 209 bits (511), Expect = 6e-53
Identities = 97/234 (41%), Positives = 157/234 (67%)
Frame = +3
Query: 192 LKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGT 371
++ P + I++ + + M++N GPQHP+ HGVLRLVL DGE V A PHIG LHR
Sbjct: 18 MEMAPTSGIVE-IDVRTDEMLVNMGPQHPSTHGVLRLVLRTDGEVVSEATPHIGYLHRCA 76
Query: 372 EKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRL 551
EK+ E T Q +PY DR+DY++ M ++LAVEKL++ D+P +A+++R + AE+ R+
Sbjct: 77 EKIGENLTPRQWIPYTDRMDYLAGMNMNLGWALAVEKLIDYDLPEKARHLRVIIAELNRI 136
Query: 552 LNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGL 731
+H++ +GT+ LD+G+ +PF + F ERE++++ E GAR+ +Y+ PGG + D+P G
Sbjct: 137 ASHLVGMGTYGLDLGSFSPFLYAFRERERILDLLEDACGARLTYSYLTPGGATADLPPGW 196
Query: 732 MDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ + F +F I + +LT N I+++RT +IGV++A+ A++YG SG +LR
Sbjct: 197 LQKLTGFLDQFEPVILDYHALLTNNAIFIKRTANIGVMSAEMAIDYGCSGPVLR 250
>UniRef50_Q67KN9 Cluster: NADH dehydrogenase I subunit D; n=19;
Firmicutes|Rep: NADH dehydrogenase I subunit D -
Symbiobacterium thermophilum
Length = 384
Score = 207 bits (506), Expect = 3e-52
Identities = 106/234 (45%), Positives = 156/234 (66%), Gaps = 14/234 (5%)
Frame = +3
Query: 234 KKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 413
++ + +++N GPQHP+ HGVLRL+++LDGE V +P IG LHR EKL E KTY Q +P
Sbjct: 4 ERTQELLVNMGPQHPSTHGVLRLMIKLDGEQVTWCEPDIGYLHRCFEKLAEQKTYPQVIP 63
Query: 414 YFDRLDYVSMMCNEQCYSLAVEKLLN--IDVPLRAKYIRTLFAEITRLLNHIMAVGTHAL 587
+ DR DY++ M NE CY AVEKL I VP RA+YIR + AE+ R+ +H++A+G+ A+
Sbjct: 64 FTDRTDYLAAMLNELCYVEAVEKLFGDAIQVPERAQYIRVMLAELQRITSHLLALGSMAM 123
Query: 588 DVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLM------DD--- 740
D+GA TPF + + +REK+ +ER++G RM Y+R GGV D+P G++ +D
Sbjct: 124 DLGATTPFLYCWRDREKLYSLFERITGGRMLYNYLRIGGVRNDLPEGILGTPQDGEDKAD 183
Query: 741 --IYEFSSKFAERI-DEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
I+ F + F + E + ++T NRI+ RTK+IGV+TA+ A+ Y SG +LR
Sbjct: 184 KTIWGFINYFDSYVYPEWKALVTGNRIFQYRTKNIGVLTAEQAIAYSCSGAVLR 237
>UniRef50_Q1AVI6 Cluster: NADH dehydrogenase; n=1; Rubrobacter
xylanophilus DSM 9941|Rep: NADH dehydrogenase -
Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 358
Score = 205 bits (500), Expect = 1e-51
Identities = 97/214 (45%), Positives = 141/214 (65%), Gaps = 1/214 (0%)
Frame = +3
Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
+N GPQHPA HG+LRL+LELDGET+ DP +G LHR EK+ E +TY +P DRLDY
Sbjct: 1 MNMGPQHPAMHGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRTYPAVIPLTDRLDY 60
Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
+ M NE Y LAVE LL +++P RA+YIR L E+ R+ +H+ ++G L++GA TP
Sbjct: 61 FANMHNEHGYCLAVEDLLGVEIPPRAEYIRVLMCELMRIASHLPSIGFLLLELGAFTPIL 120
Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERI-DEVED 791
+ F ERE++ F+E V+GARM YIR GGV D+P + + I+E+ +RI + D
Sbjct: 121 YAFRERERIQNFFEAVTGARMMFHYIRIGGVKADLPPDIPEKIWEYVEGLEKRIKPDFID 180
Query: 792 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
++ N I+++RT+ I +T ++A+ G +G LR
Sbjct: 181 LIEGNEIFIERTRGISRLTQEEAIELGLTGPPLR 214
>UniRef50_Q979M3 Cluster: NADH dehydrogenase I chain D; n=6;
Thermoplasmatales|Rep: NADH dehydrogenase I chain D -
Thermoplasma volcanium
Length = 369
Score = 200 bits (489), Expect = 3e-50
Identities = 92/213 (43%), Positives = 144/213 (67%)
Frame = +3
Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
+NFGPQHP+ HGVLRL ++LDGE V+ +P IG LHR EK+ E + Y + YFDR+DY
Sbjct: 9 VNFGPQHPSMHGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNMIYFDRMDY 68
Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
V+ M E Y A EKLL+++ P RAK+IR + E+ R+ +H++ +G LD+G LTPFF
Sbjct: 69 VAAMNMEIGYLEAAEKLLDVEPPGRAKWIRVMMGELNRIASHLVWLGAFGLDLGMLTPFF 128
Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
+ F+EREK+++ + VSG+R Y+ GGV D+ +D I +F ++F + ++ + ++
Sbjct: 129 YCFKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKQFITEFPKELNMIANL 188
Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
N I++ RTK +G+++ + A++YG +G MLR
Sbjct: 189 FVKNDIFLSRTKGVGILSKEMAIDYGVTGPMLR 221
>UniRef50_Q56220 Cluster: NADH-quinone oxidoreductase subunit 4;
n=10; Bacteria|Rep: NADH-quinone oxidoreductase subunit
4 - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM
579)
Length = 409
Score = 200 bits (489), Expect = 3e-50
Identities = 99/235 (42%), Positives = 148/235 (62%), Gaps = 1/235 (0%)
Frame = +3
Query: 192 LKPVPYNSIIKPA-EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRG 368
L+ +P ++ + A E + M LN GPQHP+ HGVLRL++ L GE V PHIG LH G
Sbjct: 6 LEEIPLDAPPEEAKELRTEVMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTG 65
Query: 369 TEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITR 548
EK +E++TY Q + Y R+DY+ ++ Y+LAVEKLL VP RA+ IR + E++R
Sbjct: 66 FEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSR 125
Query: 549 LLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLG 728
L +H++ +GT LD+GALTPFF+ F ERE +++ +E V+G R H YIR GGV D+P
Sbjct: 126 LASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEE 185
Query: 729 LMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ ++ + RIDE E + + I+ +R + +GV+ + A++ G +G LR
Sbjct: 186 FVPELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLR 240
>UniRef50_Q5DUX5 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=3; Nyctotherus ovalis|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Nyctotherus ovalis
Length = 412
Score = 198 bits (483), Expect = 2e-49
Identities = 100/222 (45%), Positives = 141/222 (63%), Gaps = 3/222 (1%)
Frame = +3
Query: 237 KVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 416
+ R +ILNFGPQHPA+HGVLRLV+ + GE V DPHIG LHRGTE+L+E +Y A +
Sbjct: 23 RFRILILNFGPQHPASHGVLRLVIVIIGEVVTKLDPHIGFLHRGTERLVEEHSYMNAAVF 82
Query: 417 FDRLDYVSMMCNEQCYSLAVEK-LLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDV 593
DRLDY +++ Y LAVE+ L + +R + +RT+F E++R+LNH++++ THALD+
Sbjct: 83 MDRLDYTTVLTQTHAYCLAVEQALAKSRLCIRTQLLRTIFDELSRILNHLLSIATHALDI 142
Query: 594 GALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPL--GLMDDIYEFSSKFA 767
G + FW FE+RE++ME YE +SGARMH A P +LD L L+ I FS
Sbjct: 143 GTMAMLFWAFEDRERIMELYEYISGARMHTALYYP-NQTLDHILTNELLAKILIFSRNSE 201
Query: 768 ERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ E+ L NR+W R IGVV+ + + + SG + R
Sbjct: 202 KTYTEIYIALYNNRVWRLRLCGIGVVSTEISTSTTISGPVAR 243
>UniRef50_Q67P19 Cluster: NADH dehydrogenase I subunit D; n=1;
Symbiobacterium thermophilum|Rep: NADH dehydrogenase I
subunit D - Symbiobacterium thermophilum
Length = 404
Score = 197 bits (481), Expect = 3e-49
Identities = 94/224 (41%), Positives = 142/224 (63%), Gaps = 3/224 (1%)
Frame = +3
Query: 231 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 410
E++ M L+ GP HPA HGVLR+ LEL+GETV A+P G LH G EK E+ T+ QA
Sbjct: 11 EQRPERMTLSIGPHHPATHGVLRVKLELEGETVVKAEPETGFLHTGIEKTAEHLTWNQAT 70
Query: 411 PYFDRLDYVSMMCNEQCYSLAVEKLLNID--VPLRAKYIRTLFAEITRLLNHIMAVGTHA 584
DR+DY+S + N Y +AVEKLL I+ +P +A+ R + E+ R+ +H++ +GT
Sbjct: 71 TVMDRMDYLSPISNNTGYVMAVEKLLGIEDRIPEKARVTRVILLELNRVASHLVGLGTGG 130
Query: 585 LDVGAL-TPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSK 761
LD G + TP FW FE R+++++ +E +G RM+ +Y+R GG++ D+P + + +F
Sbjct: 131 LDYGNIGTPIFWAFELRDRILDIFEHTTGQRMNPSYMRVGGLAYDLPHNFKEMVEDFLKV 190
Query: 762 FAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
RI E++DV+ N I+V R K + V+T + AL YG +G LR
Sbjct: 191 APGRIQELKDVMLHNPIFVDRAKGVSVITYEQALRYGLTGRNLR 234
>UniRef50_A7H9U8 Cluster: NADH dehydrogenase; n=2;
Anaeromyxobacter|Rep: NADH dehydrogenase -
Anaeromyxobacter sp. Fw109-5
Length = 381
Score = 196 bits (479), Expect = 5e-49
Identities = 87/226 (38%), Positives = 144/226 (63%)
Frame = +3
Query: 216 IIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKT 395
I++ ++ M+LNFGPQHP+ HGV+ ++E DGE ++ A P +G LHR EK+ E
Sbjct: 5 ILRRVDRNNEEMVLNFGPQHPSTHGVINFIVETDGEVMKRAIPDVGYLHRSIEKIGEVTG 64
Query: 396 YTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVG 575
Y +P+ DR+DYV+ M + Y++AVEKLL ++VP RA+++R + E+ R+ +H++AVG
Sbjct: 65 YPGFMPFTDRIDYVAAMFANEGYAIAVEKLLKVEVPPRAQWLRAISGELVRIASHLIAVG 124
Query: 576 THALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFS 755
T +D+GA TP ERE++ ++ E + GAR+ Y R GGV+ D+P G D + F
Sbjct: 125 TMTMDIGAFTPMVHGLREREEINDYIEALCGARLTYNYHRIGGVAFDLPEGWRDKVLAFL 184
Query: 756 SKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+F + + E + ++T N I+ +R ++ ++ + A++YG G LR
Sbjct: 185 DRFDKFLPEFDRLITFNEIYKKRLANVATISREQAISYGLVGPNLR 230
>UniRef50_Q6MIR5 Cluster: NADH dehydrogenase I,D subunit; n=1;
Bdellovibrio bacteriovorus|Rep: NADH dehydrogenase I,D
subunit - Bdellovibrio bacteriovorus
Length = 560
Score = 196 bits (478), Expect = 6e-49
Identities = 89/213 (41%), Positives = 142/213 (66%)
Frame = +3
Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
LN GP H A HG LR++ E+DGET+ + IG LHR EK+ E Y Q +PY DRL+Y
Sbjct: 179 LNIGPSHTAMHGTLRVMAEMDGETIVRCNNEIGYLHRCFEKMAETHPYNQVIPYTDRLNY 238
Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
S N Y AVE+LL +++P +A+ +R + AE++R+++H +A+GT A+D+GALT FF
Sbjct: 239 CSAPMNNIGYCKAVERLLGVEIPPKAQAMRVILAELSRIIDHTIAIGTGAMDLGALTSFF 298
Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
++F REK+ +E++ GAR+ + R GG++ D P G D++ + + DE+ ++
Sbjct: 299 YMFGMREKVYGLFEKLCGARLTVSMTRIGGMAQDAPEGWFDEVLALVKEIRKGTDEMANM 358
Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ N+I++QRTK++ V+A DA+ +G++G MLR
Sbjct: 359 VIDNKIFIQRTKNVCPVSAADAIQWGYTGPMLR 391
>UniRef50_P56753 Cluster: NAD(P)H-quinone oxidoreductase chain H,
chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain
H); n=129; cellular organisms|Rep: NAD(P)H-quinone
oxidoreductase chain H, chloroplast (EC 1.6.5.-)
(NAD(P)H dehydrogenase, chain H) - Arabidopsis thaliana
(Mouse-ear cress)
Length = 393
Score = 196 bits (478), Expect = 6e-49
Identities = 89/215 (41%), Positives = 136/215 (63%)
Frame = +3
Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
MI+N GP HP+ HGVLRL++ LDGE V +P +G LHRG EK+ E + Q LPY R
Sbjct: 11 MIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVTRW 70
Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
DY++ M E E+L NI VP RA YIR + E++R+ +H++ +G D+GA TP
Sbjct: 71 DYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTP 130
Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
FF++F ERE + + +E +G RM + R GG++ D+P G +D +F F + E +
Sbjct: 131 FFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVVEYQ 190
Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
++T N I+++R + +G++ ++A+N+G SG MLR
Sbjct: 191 KLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLR 225
>UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits; n=32;
Proteobacteria|Rep: NADH dehydrogenase I, B/C/D subunits
- Geobacter sulfurreducens
Length = 792
Score = 196 bits (477), Expect = 8e-49
Identities = 95/215 (44%), Positives = 136/215 (63%)
Frame = +3
Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
+ILN GPQHP HG++R VL+LDGE + D IG HRG EK+ E + + Q +PY DR+
Sbjct: 409 LILNLGPQHPGTHGIIRFVLKLDGEEIVDMDTDIGYHHRGAEKIGERQHWNQFIPYTDRI 468
Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
DY++ + N Y +VE+L I VP R IR + AE+ R+ NH++ +GT A DVGA+TP
Sbjct: 469 DYLAGVQNNLAYVNSVERLCGITVPDRGIAIRVMLAELFRIANHLVWLGTFAADVGAMTP 528
Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
F+ F +REK+ + E V+G RMH ++ R GGV+ D+P G + F R+ E E
Sbjct: 529 VFYTFTDREKIFDIVEMVTGGRMHPSWFRIGGVADDLPEGWDGAVKAFLDWMPGRLKEYE 588
Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
D+L N I+ +R K +GV+T +AL +G +G LR
Sbjct: 589 DLLKGNPIFRERLKGVGVITGDEALEWGITGPNLR 623
>UniRef50_A7H9V5 Cluster: NADH dehydrogenase; n=4;
Cystobacterineae|Rep: NADH dehydrogenase -
Anaeromyxobacter sp. Fw109-5
Length = 431
Score = 193 bits (471), Expect = 4e-48
Identities = 97/228 (42%), Positives = 142/228 (62%)
Frame = +3
Query: 210 NSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEY 389
N + P K+ M +N GP HPA HGV R V+ELDGE +R+ IG LHRG EK E
Sbjct: 37 NELDAPLASKL--MTVNLGPSHPAMHGVTRAVVELDGEMIRSMKLDIGFLHRGFEKSCEN 94
Query: 390 KTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMA 569
T+TQ PY DRL+YVS + N ++LAVEKL +DVP RAKY+R + +EI R+ +H+
Sbjct: 95 VTWTQCFPYTDRLNYVSSIMNNVGFALAVEKLCKLDVPERAKYLRVVTSEIHRICDHLTL 154
Query: 570 VGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYE 749
VG A+++GA+T F + E R+ + + + GAR+ + Y R GGV+ D P G ++ +
Sbjct: 155 VGAMAMELGAMTVFLYAIEARDIIYDRLAELCGARLTSNYGRIGGVARDTPDGWIEKTEK 214
Query: 750 FSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ +DE++ +++ NRI++ RT+ GVV DA+ GF+G LR
Sbjct: 215 TLDRVKGYVDEIDQLVSRNRIFIDRTRGTGVVPRADAIELGFTGPCLR 262
>UniRef50_A5UXK3 Cluster: NADH dehydrogenase; n=3; Chloroflexi
(class)|Rep: NADH dehydrogenase - Roseiflexus sp. RS-1
Length = 374
Score = 192 bits (467), Expect = 1e-47
Identities = 96/220 (43%), Positives = 133/220 (60%), Gaps = 1/220 (0%)
Frame = +3
Query: 237 KVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 416
+ + + +N GPQHP+ HGV R+++ +DGET+ P G LHR E+L E TY Q++PY
Sbjct: 3 QTQELQINIGPQHPSTHGVFRMIVTVDGETIVDLKPVFGYLHRNHEQLAEVSTYIQSMPY 62
Query: 417 FDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 596
DRLDY + M N +LAVEKL I VP RA+YIR L E+TR+LNH AVG D+G
Sbjct: 63 TDRLDYFNSMANNHALALAVEKLAGISVPQRAEYIRVLMVELTRILNHASAVGFLLNDMG 122
Query: 597 A-LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAER 773
A TP + EREK+++ +E SGARM Y R GGV D+P + + E
Sbjct: 123 AWQTPLMFGMREREKILDLFEMASGARMMCNYFRFGGVWRDLPPEFIPQLKELMQGLPSF 182
Query: 774 IDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
DE E +L N I + RT ++GV+ + A++Y +G +LR
Sbjct: 183 FDEFERLLKENEILLSRTINVGVLPKEVAVSYSVTGPVLR 222
>UniRef50_Q3ZXR8 Cluster: Proton-translocating NADH-quinone
oxidoreductase, D subunit; n=7; Bacteria|Rep:
Proton-translocating NADH-quinone oxidoreductase, D
subunit - Dehalococcoides sp. (strain CBDB1)
Length = 367
Score = 191 bits (466), Expect = 2e-47
Identities = 96/220 (43%), Positives = 133/220 (60%), Gaps = 1/220 (0%)
Frame = +3
Query: 237 KVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 416
K N ILN GPQHP+ HGV RL + LDGE + +P G LHRG EKL E +TY Q +P+
Sbjct: 4 KTENFILNIGPQHPSTHGVFRLRIVLDGEVITDLEPVFGYLHRGIEKLAEGRTYLQDIPF 63
Query: 417 FDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 596
DRLDY+ M N Y +AVEKL I VP RA+YIR + E+ R+ +H+ +G D+G
Sbjct: 64 TDRLDYLGSMTNNHAYVMAVEKLAGITVPERAEYIRVILDELQRIASHLAGLGFFLNDLG 123
Query: 597 AL-TPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAER 773
AL TP ++F EREK++E ++ SG R++ Y R GG D+P + +
Sbjct: 124 ALQTPLLYMFREREKIVELFDMCSGQRLNYNYYRFGGFVQDLPEEFLPALKILLDTLPGF 183
Query: 774 IDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
IDE E +++TN I + RTK +GV+ A+N +G +LR
Sbjct: 184 IDEYEQLISTNEIVLIRTKGVGVLKRDLAINSSAAGPVLR 223
>UniRef50_P65570 Cluster: NADH-quinone oxidoreductase subunit D;
n=41; Bacteria|Rep: NADH-quinone oxidoreductase subunit
D - Mycobacterium bovis
Length = 440
Score = 191 bits (466), Expect = 2e-47
Identities = 90/217 (41%), Positives = 139/217 (64%), Gaps = 2/217 (0%)
Frame = +3
Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
+++N GPQHP+ HGVLRL+LE++GETV A IG LH G EK +EY+ +TQ + + R+
Sbjct: 39 IVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRM 98
Query: 429 DYVSMMCNEQCYSLAVEKLLNI--DVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGAL 602
DY+S NE Y L VEKLL I ++P R IR L E+ R+ +H++A+ T +++GA+
Sbjct: 99 DYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAM 158
Query: 603 TPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDE 782
TP F F RE ++ +E+++G RM++AYIRPGGV+ D+P +I E + + + E
Sbjct: 159 TPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLRE 218
Query: 783 VEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ ++L N IW RT+ +G + + G +G +LR
Sbjct: 219 MGELLNENAIWKARTQGVGYLDLTGCMALGITGPILR 255
>UniRef50_A4XCQ7 Cluster: NADH dehydrogenase; n=5;
Actinomycetales|Rep: NADH dehydrogenase - Salinispora
tropica CNB-440
Length = 388
Score = 188 bits (459), Expect = 1e-46
Identities = 90/216 (41%), Positives = 137/216 (63%)
Frame = +3
Query: 246 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 425
+M+LN GPQHP+ HGVLRL L LDGE V +A+P +G +HRG EKL E + Y Q + +R
Sbjct: 27 DMVLNIGPQHPSTHGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVRDYRQIIVLANR 86
Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 605
D++S NE LAVE+LL ++VP RA ++R AE+ R+LNH+M +G++ L++GA+T
Sbjct: 87 HDWLSAFANELGVVLAVERLLGMEVPERATWLRMALAELNRVLNHLMFLGSYPLEIGAIT 146
Query: 606 PFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEV 785
P F+ F ERE + E VSG R+H + R GG+ ++P G + + ++
Sbjct: 147 PMFYAFRERETLQTALEEVSGGRIHYMFNRVGGLKEEVPAGWTGRARAAIGEVRRSLPDL 206
Query: 786 EDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
++++ N I++ RT +GV++A A YG SG + R
Sbjct: 207 DNLIRRNEIFLARTVGVGVLSAAQAAAYGASGPVAR 242
>UniRef50_Q6MDR3 Cluster: Putative NADH-ubiquinone oxidoreductase
chain C/D; n=1; Candidatus Protochlamydia amoebophila
UWE25|Rep: Putative NADH-ubiquinone oxidoreductase chain
C/D - Protochlamydia amoebophila (strain UWE25)
Length = 402
Score = 184 bits (448), Expect = 3e-45
Identities = 92/225 (40%), Positives = 140/225 (62%)
Frame = +3
Query: 219 IKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTY 398
+K E+ M LN GPQHP+ HGVLRL L L+GE V + DP IG LH G EK E +TY
Sbjct: 9 LKELEESGDVMELNLGPQHPSTHGVLRLKLRLEGEVVLSCDPVIGYLHTGVEKECESRTY 68
Query: 399 TQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGT 578
Q DRLDY+S EQ ++ A+E+L+NI+VP RA+ IR + E++R+ +H++ GT
Sbjct: 69 HQVFTLVDRLDYLSGPAEEQAFAGALERLMNIEVPERAQTIRIILLELSRIASHLLWAGT 128
Query: 579 HALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSS 758
AL++ + F + F EREK+++ +E+VSGARM + R GG++ D+ + + EF S
Sbjct: 129 SALELNMSSVFMYSFAEREKILDLFEQVSGARMFPSLWRIGGLAKDLNSDFISHLKEFIS 188
Query: 759 KFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
F + E++ +LT N +W +R + + V+ + Y +G +LR
Sbjct: 189 GFQKIWKELDRLLTDNFVWCKRLQGVAVIDQEICKQYMCTGPVLR 233
>UniRef50_A1ALP2 Cluster: NADH dehydrogenase; n=1; Pelobacter
propionicus DSM 2379|Rep: NADH dehydrogenase -
Pelobacter propionicus (strain DSM 2379)
Length = 403
Score = 180 bits (439), Expect = 3e-44
Identities = 86/219 (39%), Positives = 139/219 (63%), Gaps = 3/219 (1%)
Frame = +3
Query: 246 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 425
++++N GP HPA HG ++++ LDGE V AD H G LHRG EK E+ TY + +P+ DR
Sbjct: 19 HVLVNMGPSHPATHGTIQIIAALDGERVAKADIHCGYLHRGFEKESEHHTYHKIIPFTDR 78
Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 605
L+Y S + N Y VEKLL I++ R Y+RTL AE R+ +H+ V +++GA+T
Sbjct: 79 LNYCSALNNNFAYVEGVEKLLGIELTPRCIYLRTLLAEYNRVADHVTCVAATVMEMGAMT 138
Query: 606 PFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMP---LGLMDDIYEFSSKFAERI 776
F +L R+ + E +++GAR+ ++ R GG+ D+P L +++I +F+ K+ RI
Sbjct: 139 AFLYLMTIRDYIFEHLNQLTGARLTYSFARVGGLKNDLPDGWLERLEEILQFTEKYCGRI 198
Query: 777 DEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+L NRI++ RT+D+G ++ + ALN+G++G +LR
Sbjct: 199 ---HGLLDRNRIFIDRTRDVGAMSPEHALNWGYTGPILR 234
>UniRef50_P0A1Y6 Cluster: NADH-quinone oxidoreductase subunit C/D;
n=95; cellular organisms|Rep: NADH-quinone
oxidoreductase subunit C/D - Salmonella typhimurium
Length = 600
Score = 179 bits (435), Expect = 1e-43
Identities = 87/215 (40%), Positives = 129/215 (60%)
Frame = +3
Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
M LN GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY DR+
Sbjct: 216 MFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRI 275
Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
+Y+ NE Y LAVEKL I VP R IR + +E+ R+ +H++ + T DVGA+TP
Sbjct: 276 EYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTP 335
Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
F+ F +R+K+ + E ++G RMH A+ R GGV+ D+P G + EF +R+D E
Sbjct: 336 VFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPKRLDSYE 395
Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
N I R++ + A++AL +G +G LR
Sbjct: 396 KAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLR 430
>UniRef50_Q190M8 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=2; Desulfitobacterium hafniense|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Desulfitobacterium hafniense (strain DCB-2)
Length = 370
Score = 175 bits (426), Expect = 1e-42
Identities = 82/215 (38%), Positives = 131/215 (60%)
Frame = +3
Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
++LN GPQHP+ HGV R+V+ L GETV +P IG LHRG EK+ E +TY Q +PY DRL
Sbjct: 12 LLLNMGPQHPSMHGVFRMVVRLQGETVTGIEPKIGYLHRGLEKIAESRTYPQFIPYTDRL 71
Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
DY++ N Y VEKL+ +++P RA+Y+R + AE+ R +H + + + ALD+ T
Sbjct: 72 DYLASPHNNLAYVQTVEKLMGLEIPERAEYLRIILAELARFASHQVFIASAALDMAGWTA 131
Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
+ + F +RE++++ +E +SG+R+ +R GGVS + P + F E+++E
Sbjct: 132 WGYPFRDRERILDLFEMMSGSRLTVNCMRIGGVSAEPPAEFWPALESFLDDMPEKLEEYF 191
Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
++ N I R K +G+++ + A N +G LR
Sbjct: 192 NIYMGNEIAQARMKKVGILSKEVAENLCITGPALR 226
>UniRef50_Q9P9G0 Cluster: F420H2 dehydrogenase subunit FpoD; n=6;
Archaea|Rep: F420H2 dehydrogenase subunit FpoD -
Methanosarcina mazei (Methanosarcina frisia)
Length = 374
Score = 172 bits (419), Expect = 9e-42
Identities = 83/215 (38%), Positives = 137/215 (63%)
Frame = +3
Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
MI++ GPQHP G RL L+L GET+ A+ +G +H+G EK++E +TY Q + DR+
Sbjct: 10 MIVHLGPQHPMQPGPFRLNLKLKGETIMDAEVEMGYIHKGIEKILENRTYLQGITIVDRI 69
Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
Y+ + NE+CY VEKLL+I+ P RA+YIR + E++RL +H++ +G + +G ++
Sbjct: 70 CYLVALTNEECYVGCVEKLLDIEPPERAQYIRVILEELSRLQSHLLGLGEYGEFIGFVSM 129
Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
F + +ERE ++ + V+GAR+ +Y+R GGV D+P G + +K + I + E
Sbjct: 130 FMYTIKEREDILTLIDMVTGARVTHSYLRFGGVRDDLPEGFKEKTIPVLNKLKKVIRDYE 189
Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
++ ++ I+ +RT IGV+TA +A + G SG +LR
Sbjct: 190 EMFYSDTIYRERTIGIGVLTADEAKSLGVSGPVLR 224
>UniRef50_Q8A0F6 Cluster: NADH dehydrogenase I, chain D; n=8;
Bacteroidetes|Rep: NADH dehydrogenase I, chain D -
Bacteroides thetaiotaomicron
Length = 538
Score = 171 bits (417), Expect = 2e-41
Identities = 88/238 (36%), Positives = 136/238 (57%), Gaps = 3/238 (1%)
Frame = +3
Query: 177 ESTKSLKPVPYNSIIKPAEKKV---RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPH 347
++T+ ++ P + IK E K+ ++N GPQHPA HGV+R + L+GE +R D +
Sbjct: 154 DTTQEIELNP-DGTIKNREMKLFGEEEYVVNIGPQHPATHGVMRFRVSLEGEIIRKIDAN 212
Query: 348 IGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRT 527
G +HRG EK+ E TY Q L DRLDY+ N + +EK + I+V R KYIRT
Sbjct: 213 CGYIHRGIEKMNESLTYPQTLALTDRLDYLGAHQNRHALCMCIEKAMGIEVSDRVKYIRT 272
Query: 528 LFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 707
+ E+ R+ +H++ A+D+GALT FF+ F +REK+++ +E G R+ Y GGV
Sbjct: 273 IMDELQRIDSHLLFYSALAMDLGALTAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGV 332
Query: 708 SLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSG 881
D+ + + EF I E D+ T N I R K +GV++ +DA+++G +G
Sbjct: 333 QADLHPNFVKRVKEFIPYMRGIIHEYHDIFTGNIIAQSRMKGVGVLSREDAISFGCTG 390
>UniRef50_A0RMD1 Cluster: NADH-quinone oxidoreductase chain c/d;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
NADH-quinone oxidoreductase chain c/d - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 561
Score = 170 bits (413), Expect = 5e-41
Identities = 81/221 (36%), Positives = 132/221 (59%)
Frame = +3
Query: 231 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 410
E K + LN GP HPA HG +R + LDGE + + IG LHRG EK E +Y Q +
Sbjct: 172 EFKTKYTFLNIGPSHPATHGTIRNFVALDGEKIISCVTEIGYLHRGFEKACENHSYAQII 231
Query: 411 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 590
PY DRL+Y S M N Y+ AVE+ L +++P R ++R + E+ R+++H + +G +D
Sbjct: 232 PYTDRLNYCSAMLNNVGYAKAVEEALGLNLPDRGIFMRVILGELARIIDHEVCLGAMFVD 291
Query: 591 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAE 770
+G LT +++L+ RE++ F +++GAR ++ R GG++ D G +++ +
Sbjct: 292 MGGLTNYWYLYNPRERIYNFLSKLTGARFTNSFARIGGMANDFYDGWKEELLAHLKDVEK 351
Query: 771 RIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+D+ ++ NRI++ R ++I + A DAL+YGFSG LR
Sbjct: 352 GVDDTMILIEKNRIFLDRVQNICKINANDALSYGFSGPNLR 392
>UniRef50_Q2C5T4 Cluster: NADH dehydrogenase I, B/C/D subunits; n=2;
Vibrionaceae|Rep: NADH dehydrogenase I, B/C/D subunits -
Photobacterium sp. SKA34
Length = 565
Score = 168 bits (409), Expect = 1e-40
Identities = 80/216 (37%), Positives = 128/216 (59%)
Frame = +3
Query: 246 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 425
+M+LN GP HP GV+RL +++ GE + D IG HRG EK+ E T+ +PY DR
Sbjct: 180 SMVLNIGPNHPGTDGVIRLKVKMKGEFIEDLDQEIGFHHRGAEKIAERHTFHNYIPYTDR 239
Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 605
+DY+ + E Y L +E + I+VP RAK +R + E+ R+ +H++ G+ ++G +
Sbjct: 240 IDYLGGVAGELPYLLGLEAMTGIEVPERAKTMRIMLCELFRISSHLVWFGSITHNLGGMA 299
Query: 606 PFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEV 785
P F+ F EREK+ + E + G RMH A+ R GGVS D+P G D + + + ++
Sbjct: 300 PAFYAFTEREKIFDVIELICGGRMHPAFFRIGGVSQDLPDGWQDKVEHACQGIEQLVPDL 359
Query: 786 EDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
E ++T + I+ RT++I V + AL++G +G LR
Sbjct: 360 EKLMTHSMIFKIRTQNIAVYSQSMALDWGLTGPNLR 395
>UniRef50_P21301 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit homolog; n=3; Trypanosomatidae|Rep:
NADH-ubiquinone oxidoreductase 49 kDa subunit homolog -
Trypanosoma brucei brucei
Length = 386
Score = 167 bits (407), Expect = 3e-40
Identities = 87/211 (41%), Positives = 118/211 (55%)
Frame = +3
Query: 261 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 440
FGPQHPAAHGVL +L GE + D IG LHRGTEKL EYK+ Q LPYFDRLDYVS
Sbjct: 15 FGPQHPAAHGVLCCLLYFCGEFIVYIDCIIGYLHRGTEKLCEYKSVEQCLPYFDRLDYVS 74
Query: 441 MMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWL 620
+ CNE SL E +L + LR ++R L E TR N ++ + LD+G L+P W
Sbjct: 75 VCCNEHLLSLCFEYMLRCCLSLRCAFMRLLIVEFTRSFNGLLCISCMVLDLGCLSPLLWS 134
Query: 621 FEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLT 800
FEER+K+M F++ G RMH A++ G+ D G +D + +D + +
Sbjct: 135 FEERDKLMTFFDLCCGCRMHLAFMVLLGILDDFVFGFVDFLLLLIISCLFVMDCYDLLFV 194
Query: 801 TNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
NR++ R + + D + SGV+ R
Sbjct: 195 GNRLFYLRLRGLSFFDLYDLVFNSLSGVLSR 225
>UniRef50_Q8F7Q2 Cluster: NADH dehydrogenase I, D subunit; n=8;
Bacteria|Rep: NADH dehydrogenase I, D subunit -
Leptospira interrogans
Length = 405
Score = 166 bits (403), Expect = 8e-40
Identities = 79/216 (36%), Positives = 134/216 (62%)
Frame = +3
Query: 246 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 425
++++N GP HPA HG+L+ V+++DGE + A+ IG +HR EKL E TY Q L DR
Sbjct: 21 HLLVNLGPSHPATHGILQNVIQIDGERIVEAESVIGYVHRCFEKLGERYTYNQFLVCTDR 80
Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 605
++YVS N + LAVEK++ I+VP R Y+R + +E++R+++HI+ G +D+GA +
Sbjct: 81 MNYVSTPLNNIGWILAVEKMMQIEVPDRVTYVRMIISELSRIIDHIICTGILGVDLGAFS 140
Query: 606 PFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEV 785
LF RE + + E+++GAR+ + R GG+ D+ + ++ I+E
Sbjct: 141 GMLHLFHHRENIYQIIEKLTGARLTTTFCRIGGLEKDIYPDFVKEVKLVCKGLKPAIEEF 200
Query: 786 EDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+L N+I++ RT+ IG ++A++A+ YG++G LR
Sbjct: 201 NSLLLKNKIFLGRTEGIGGISAENAIAYGYTGPNLR 236
>UniRef50_Q1K3R4 Cluster: NADH dehydrogenase; n=4;
Deltaproteobacteria|Rep: NADH dehydrogenase -
Desulfuromonas acetoxidans DSM 684
Length = 374
Score = 162 bits (394), Expect = 9e-39
Identities = 79/221 (35%), Positives = 127/221 (57%)
Frame = +3
Query: 231 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 410
+++ +LN GPQHP+ HGVLR++LE++GE V P +G HR EK+ E+K +
Sbjct: 9 DERHHRFVLNMGPQHPSTHGVLRVLLEMEGEYVIEPQPVLGYGHRCHEKIAEFKPAKSFM 68
Query: 411 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 590
P R+DY+ + Y+L +EK I+VP RA YIR + +E+ R+ +H++ G + LD
Sbjct: 69 PNTARMDYLGALIYNHGYALLLEKATGIEVPRRADYIRVITSELNRIQSHLLWFGAYLLD 128
Query: 591 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAE 770
+GA TP + F++RE++++ E V+G+R+ Y R GGV D+ + F +
Sbjct: 129 LGAFTPIMYAFDDREEILDILEDVTGSRLTYCYFRVGGVCKDIDDKFVASTRNFIDRLRG 188
Query: 771 RIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
R E+++ N I +R K IG T + YG +G +LR
Sbjct: 189 RFPMYEELVNGNIILQKRLKGIGEYTPELCARYGVTGPLLR 229
>UniRef50_UPI00015BB164 Cluster: NADH-ubiquinone oxidoreductase,
chain 49kDa; n=1; Ignicoccus hospitalis KIN4/I|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa - Ignicoccus
hospitalis KIN4/I
Length = 540
Score = 157 bits (380), Expect = 5e-37
Identities = 75/210 (35%), Positives = 123/210 (58%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GPQHPA HG + +L L GE V P +G +HRG E + E K Y + +P DR Y+
Sbjct: 176 GPQHPATHGPVGFLLGLKGEIVEDVIPRLGYVHRGVEWIYEQKEYLKVIPLLDRQCYIDG 235
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
+ E Y +A+E+++++ V RA+ +R L AE++R+ +H++ +G+ A +V LT F W
Sbjct: 236 IGWEWPYVMALEEIMDVKVDRRAQLLRILAAELSRIQSHLLYIGSFAENVNHLTAFAWTV 295
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
+RE + E ++G RM Y+RPGGV+ D+P G D + ++F + +++ +
Sbjct: 296 RDREVFINLLEMLTGQRMTFNYLRPGGVAFDLPQGFKDVYEKVVARFHKHFEKLIETTLD 355
Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
N R + + V+A+DA+ YG+SG LR
Sbjct: 356 NPTVAMRAEGVAQVSAEDAIKYGWSGPNLR 385
>UniRef50_Q9HRL9 Cluster: NADH dehydrogenase/oxidoreductase; n=6;
Halobacteriaceae|Rep: NADH dehydrogenase/oxidoreductase
- Halobacterium salinarium (Halobacterium halobium)
Length = 562
Score = 155 bits (377), Expect = 1e-36
Identities = 87/222 (39%), Positives = 127/222 (57%), Gaps = 7/222 (3%)
Frame = +3
Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYT-QALPYFDR 425
M LN GP HPA HGVL + LDGE V +P IG LHR E++ + TY Q +PY DR
Sbjct: 191 MFLNIGPHHPATHGVLHVETVLDGEQVADVNPDIGYLHRCEEQMAQKGTYRHQIMPYPDR 250
Query: 426 LDY-VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDV-GA 599
DY + NE Y+ E L +IDVP A+ +RT+ E+ R+ H++A+GT LD+ G
Sbjct: 251 WDYGPGGILNEWAYARTAEDLADIDVPEYAQILRTMGGELCRIACHMLALGTFCLDIYGD 310
Query: 600 LTP-FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMP---LGLMDDIYEFSSKFA 767
T F + +RE + E ++G RM Y+R GGV D+P + + +F +
Sbjct: 311 FTAIFMYAMRDREVVQNILEDLTGQRMMLNYLRLGGVVWDIPEPRAEFFESVRDFLDELP 370
Query: 768 ERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
ER+DE D++T+N I+ RT + GV+ + A +YG +G + R
Sbjct: 371 ERLDEYSDLITSNEIFQARTVNTGVLDYETAKDYGVTGPVAR 412
>UniRef50_A0RY68 Cluster: NADH-ubiquinone oxidoreductase, subunit D;
n=2; Thermoprotei|Rep: NADH-ubiquinone oxidoreductase,
subunit D - Cenarchaeum symbiosum
Length = 379
Score = 149 bits (360), Expect = 1e-34
Identities = 78/218 (35%), Positives = 126/218 (57%), Gaps = 1/218 (0%)
Frame = +3
Query: 243 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 422
R M LN GPQHP + G +RLV+++DG+ + + DP G +HRG EK+ EY+ + +P+ +
Sbjct: 17 RIMTLNVGPQHPGS-GHMRLVVKIDGDYIVSCDPDPGYVHRGEEKMAEYRNFVLNIPHLE 75
Query: 423 RLDYVSMMCNEQC-YSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGA 599
R + CN Y LA E ++ ++VP RAKY+R + +E+ + + + + + +G
Sbjct: 76 R-PVIHDSCNILYPYCLAAEDIIGVEVPERAKYVRVIASELNKCIYIQYWLAIYGIFLGH 134
Query: 600 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERID 779
T F W +RE +++ E+++GAR+ AY PGGV D+P D + F +RI
Sbjct: 135 STMFMWPAGDRELLIDLMEKLTGARVTHAYFVPGGVRNDLPANFEDVCLRQVNYFEKRIK 194
Query: 780 EVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
E D+ N I RT GV++ QDA+ +G +G +LR
Sbjct: 195 EYADIFYDNPILKARTVGTGVLSRQDAVRFGTTGSVLR 232
>UniRef50_Q9X0U3 Cluster: NADH dehydrogenase, 49 kDa subunit,
putative; n=4; Thermotogaceae|Rep: NADH dehydrogenase,
49 kDa subunit, putative - Thermotoga maritima
Length = 368
Score = 141 bits (342), Expect = 2e-32
Identities = 72/213 (33%), Positives = 121/213 (56%)
Frame = +3
Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
L FGP HP HG + + ++G+ V+ A P G LHRG EKL+E + + + R+
Sbjct: 6 LFFGPNHPGMHGNFSVHMYVEGDIVKKARPVPGFLHRGFEKLMERRYWYSNISLIPRICV 65
Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
NE CY++A+EK+ ++VP RA++IR + E+ R+ NHI VG +G T
Sbjct: 66 PEPDINEICYAMAIEKIAKVEVPERAQWIRMIVLELARIANHIWTVGGIGGPLGLYTASH 125
Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
W +R+++++ +E +SGAR++ YI PGGV +M + + I++ R+ + E++
Sbjct: 126 WGVADRDRILDIFEALSGARVYHMYIIPGGVRKNMTPKIEEMIWKTLDYIESRLPDYENL 185
Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ NRI R + ++T + A+ G +GV LR
Sbjct: 186 IFKNRIVHSRLRGRLILTREQAVEMGVTGVGLR 218
>UniRef50_Q9YC29 Cluster: NuoD homolog; n=4; Thermoprotei|Rep: NuoD
homolog - Aeropyrum pernix
Length = 414
Score = 136 bits (330), Expect = 5e-31
Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 2/223 (0%)
Frame = +3
Query: 219 IKPAEKKVRNMI-LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKT 395
I P++K +++ + GPQHP + G +R+ + +DG+ + ADP IG +HR EKL E +
Sbjct: 19 IIPSKKVAKDLYEIYIGPQHPGS-GHMRITIRVDGDIIVEADPDIGYVHRTMEKLGEIRG 77
Query: 396 YTQALPYFDRLDYVSMMCNEQC-YSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAV 572
+ + +P F+R+ + CN Y LAVEKL+ ++ PLRAKY+RTL EI R+ H+
Sbjct: 78 WIKPIPLFERMA-IHDACNITLPYVLAVEKLMGVEPPLRAKYLRTLLCEINRIGAHLYGF 136
Query: 573 GTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEF 752
+ +G T + W +RE +E E ++GAR+ +Y PGG D+P D
Sbjct: 137 AIFGVFLGHSTMYMWAMGDREVFIELAEALTGARLTHSYPIPGGARRDIPADFPDMARRA 196
Query: 753 SSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSG 881
+R+DE + N + R + +GV+ + A G G
Sbjct: 197 VRYMRKRLDEYAKIFLNNPVIRSRLEGVGVIPKKAAAEMGIVG 239
>UniRef50_A7C1S4 Cluster: NADH-ubiquinone oxidoreductase subunit;
n=1; Beggiatoa sp. PS|Rep: NADH-ubiquinone
oxidoreductase subunit - Beggiatoa sp. PS
Length = 380
Score = 136 bits (329), Expect = 7e-31
Identities = 72/234 (30%), Positives = 123/234 (52%)
Frame = +3
Query: 192 LKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGT 371
++P Y + PA + L FGP HP G L + L G+ V G LHRG
Sbjct: 1 MRPENYQPVEHPASHEYE---LYFGPNHPGIEGNYALKVRLSGDEVVGVKADAGYLHRGF 57
Query: 372 EKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRL 551
EK++E + + Q + R+ E+ Y+ AVE L ++VP RA++IR + E++R+
Sbjct: 58 EKIMEERLWIQNVALVPRICVPDPPPMEETYARAVEMLGGLEVPERAQWIRVMMLEMSRI 117
Query: 552 LNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGL 731
H+ G + G + FW +R+ +++ +E ++GAR++ +I PGGV D+P G
Sbjct: 118 AAHLFIAGGTSATTGQYSNMFWGIADRDLILDLFEELTGARIYNMFITPGGVRRDIPDGF 177
Query: 732 MDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+D + + R+ E +D+ N ++ +R + IG +T + AL +G +G LR
Sbjct: 178 LDRLGQVLDFLEARLPEYDDLFFDNPVFHRRAEGIGKMTQEQALAWGVTGPNLR 231
>UniRef50_Q8ZWW9 Cluster: NADH-ubiquinone oxidoreductase subunit;
n=4; Pyrobaculum|Rep: NADH-ubiquinone oxidoreductase
subunit - Pyrobaculum aerophilum
Length = 430
Score = 136 bits (329), Expect = 7e-31
Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 2/231 (0%)
Frame = +3
Query: 174 DESTKSLKPVPYNSIIKPAEKKVRNMILN--FGPQHPAAHGVLRLVLELDGETVRAADPH 347
D + ++ Y I+K + +L+ +GPQHP++ G R ++E+DG+ V P
Sbjct: 24 DNLSLFMRTEEYGLILKEERLEGGRRVLDIFWGPQHPSS-GHTRFIIEVDGDVVVNVTPD 82
Query: 348 IGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRT 527
G +HR EKL E + + Q +P F+RL + Y+LA+E+L DV RA+Y+R
Sbjct: 83 PGYVHRTMEKLGETRHWIQNIPLFERLSLPDAINVTWAYALAIERLAKYDVSPRAQYLRV 142
Query: 528 LFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 707
+ E++R+ H+ +G HA+ +G+ T F W + RE +++ + SG+R ++ PGGV
Sbjct: 143 IMGELSRISTHLYDLGLHAIMIGSSTGFMWAYGLRELLVQLWAMASGSRTTPTWVLPGGV 202
Query: 708 SLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDA 860
P + F +++DE V+ N + R KD+G ++ +DA
Sbjct: 203 RTAPPDAFYEQTRGFLDYLEKKVDEFMRVVVKNPVGYYRLKDVGYLSKEDA 253
>UniRef50_A6Q8J5 Cluster: NADH-quinone oxidoreductase, chain D; n=2;
Epsilonproteobacteria|Rep: NADH-quinone oxidoreductase,
chain D - Sulfurovum sp. (strain NBC37-1)
Length = 547
Score = 134 bits (324), Expect = 3e-30
Identities = 66/214 (30%), Positives = 118/214 (55%)
Frame = +3
Query: 252 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 431
+LN+GP HPA+ G +RL + DGE + + DP IG + R E L+ K + A+ +RL
Sbjct: 182 VLNWGPTHPAS-GPIRLRIHCDGEEIISIDPDIGYVWRALEHLVTKKDFVGAIVAVERLC 240
Query: 432 YVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPF 611
++ + + Y +AVE++ ++ AK++R L E+ R+ +H M +G ++G T
Sbjct: 241 FMDNINSMTGYCMAVEEIAGTEITEFAKWMRVLLGEVARVSSHFMGLGGFFNNLGLHTLG 300
Query: 612 FWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVED 791
W + RE ++F E SGAR+ A I PGGV + + ++D++ + KF +++
Sbjct: 301 LWNMDVREYFLDFLESYSGARIATAAIEPGGVRYGLDMAMLDELQKALDKFDATVEDTYM 360
Query: 792 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ N R K++G++T ++ YG G++ R
Sbjct: 361 IFVNNPTMKMRAKEVGILTDEEVEAYGLCGIVAR 394
>UniRef50_Q980H3 Cluster: NADH dehydrogenase subunit D; n=2;
Sulfolobaceae|Rep: NADH dehydrogenase subunit D -
Sulfolobus solfataricus
Length = 410
Score = 134 bits (324), Expect = 3e-30
Identities = 68/213 (31%), Positives = 123/213 (57%)
Frame = +3
Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
LN GPQHP + G +R+ ++L+G+ + D +G +HR EKL E + Y +P +R
Sbjct: 30 LNVGPQHPGS-GHMRIFVKLNGDIIEDVDLDVGYVHRAVEKLSENRNYMHLIPLVERPAI 88
Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
+ + Y +AVEK+L +DVP RA+Y+R+ AE+ R+ +H+ +G A+ +G T F
Sbjct: 89 LDSIHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGILAIFLGHSTGFM 148
Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
W F +RE + E ++GAR+ +Y+ PGGV D+ + + + + +R+++ + +
Sbjct: 149 WGFGDREVWVTILEALTGARVTNSYVIPGGVRKDITQEIKEMTIKAIAYQRKRLEDWKKI 208
Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
N R +++GV++ ++A+ +G G LR
Sbjct: 209 FFYNPSIRARLENVGVMSRENAIKWGAVGPNLR 241
>UniRef50_O28445 Cluster: F420H2:quinone oxidoreductase, 45 kDa
subunit; n=2; Archaea|Rep: F420H2:quinone
oxidoreductase, 45 kDa subunit - Archaeoglobus fulgidus
Length = 413
Score = 131 bits (316), Expect = 3e-29
Identities = 77/245 (31%), Positives = 128/245 (52%)
Frame = +3
Query: 159 PVMYPDESTKSLKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAA 338
PV P E P+P ++ + ++L GPQHP + G +RL++ + G+ ++
Sbjct: 12 PVEPPRELRSLFIPIP-PEYVEDTYRSDDFLVL-VGPQHPGS-GHMRLIVRVRGDIIQEV 68
Query: 339 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 518
P G +HR EKL E + Y Q +P +R + Y A+E+ L+I+VP RAK+
Sbjct: 69 IPDPGYVHRSMEKLAENRLYIQNIPLVERPAIMDAPNFNLGYVRAIEEALDIEVPERAKF 128
Query: 519 IRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRP 698
+RT+ AE+ R+ H+ A+ +G T F + F RE + E R++GAR +++I P
Sbjct: 129 LRTMLAELGRVGTHLYDAAILAVFLGHTTGFMYPFGLRELICEALVRLTGARFTSSFIIP 188
Query: 699 GGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFS 878
GGV D + IY+ + R+ E + N + R +D+GV++ ++A+ YG
Sbjct: 189 GGVRRDADDATLKWIYDMTLAMERRLKSFERIFINNPTVIARLQDVGVLSKEEAIKYGVV 248
Query: 879 GVMLR 893
G LR
Sbjct: 249 GPFLR 253
>UniRef50_A0L9R4 Cluster: NADH dehydrogenase; n=2; Bacteria|Rep:
NADH dehydrogenase - Magnetococcus sp. (strain MC-1)
Length = 391
Score = 130 bits (313), Expect = 6e-29
Identities = 71/206 (34%), Positives = 113/206 (54%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GPQHP G + + L L G+ + A H+G LHRG EKL+E +T+ Q P R+
Sbjct: 34 GPQHPGITGNMSVELTLCGDEIVDAKTHVGYLHRGFEKLMERRTFIQCFPIVCRVCVPEP 93
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
NE CY+ AVE+L I+ P RA++IRTL E+ R+ +++M +G + G W
Sbjct: 94 DFNEYCYAAAVEELAGIECPERARWIRTLILEMGRINSYLMYLGGQSGAFGMGVIGQWTT 153
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
R+ M++ +E ++GAR++ +I PGGV +P G + E + + +V DVL
Sbjct: 154 YIRDLMLDRFEELTGARIYHMFILPGGVRDGLPEGFEQRMEETLRELESTMKDVRDVLFH 213
Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSG 881
N ++ +R+ +GV+ YG +G
Sbjct: 214 NAVFKKRSVGVGVIDPAWLEPYGVTG 239
>UniRef50_A1RZ50 Cluster: NADH dehydrogenase; n=1; Thermofilum
pendens Hrk 5|Rep: NADH dehydrogenase - Thermofilum
pendens (strain Hrk 5)
Length = 404
Score = 130 bits (313), Expect = 6e-29
Identities = 69/213 (32%), Positives = 113/213 (53%)
Frame = +3
Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
L GPQHP++ G +R ++ L G+ + + DP IG +HR EKL E + +A+P +RL
Sbjct: 25 LFIGPQHPSS-GHMRFIVRLQGDVIVSVDPDIGYVHRTMEKLAEGREAIKAIPLLERLTI 83
Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
+ A+E+LL+++ P RA Y+RTL +EI R+ +H+ +G + + T F
Sbjct: 84 IDSHNATVGLVTAMERLLDVEPPPRALYLRTLLSEINRIASHLYGMGIAGIMLNHSTMFM 143
Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
W F +RE ++ E ++GAR+ Y PGGV D+P G + + + R+ + +
Sbjct: 144 WAFGDREVWLQLAEELTGARLTHTYSVPGGVRRDLPQGFGEKFEKAARYMERRLQDYMRI 203
Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
N V R + +GV+ +A G G LR
Sbjct: 204 FLENPQVVARYEGVGVLKKSEASRLGVVGPNLR 236
>UniRef50_A1RZ40 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Thermofilum pendens Hrk 5|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Thermofilum pendens (strain Hrk 5)
Length = 537
Score = 127 bits (306), Expect = 4e-28
Identities = 70/216 (32%), Positives = 116/216 (53%)
Frame = +3
Query: 246 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 425
++++ GP HPA L +DGE + A IG +HRG EK E +++ + + +R
Sbjct: 152 SVVVPVGPYHPAFKEPEYFSLVVDGERIVKAFVRIGFVHRGIEKAAESRSFFRDIFLVER 211
Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 605
+ + + C+ AVE+LLN++VP RA Y+RTL AE+ R+ +H + +G G T
Sbjct: 212 ICGICSTSHAWCFVEAVERLLNMEVPRRAAYLRTLVAELERIHSHALWLGLVGYWTGFET 271
Query: 606 PFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEV 785
F W++ RE +M+ E +SG R+H +++ GGV D+P L+ + E F + +
Sbjct: 272 MFMWVWGLRETIMDLLEEISGNRVHKSFVTIGGVRRDVPDALLRRVSERVETFRREFESL 331
Query: 786 EDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ L+ + + RTK IG + DA Y G + R
Sbjct: 332 LESLSYSEEIISRTKGIGRYSLDDARKYCAVGPVRR 367
>UniRef50_Q0W3I1 Cluster: Ech hydrogenase, subunit E; n=1;
uncultured methanogenic archaeon RC-I|Rep: Ech
hydrogenase, subunit E - Uncultured methanogenic
archaeon RC-I
Length = 359
Score = 125 bits (301), Expect = 2e-27
Identities = 67/213 (31%), Positives = 114/213 (53%)
Frame = +3
Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
+ FGPQHP +RL L LDGE V+ + G +HRG EK E+ Y +A +R+
Sbjct: 5 VQFGPQHPVWIEPIRLKLALDGELVKDVELEAGYVHRGLEKKFEWD-YNKAAYLAERVCG 63
Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
+ + C+ LAVE + +++P RA IR + E+ RL +H++A+G +G F
Sbjct: 64 ICTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLLAIGLTLEAIGFENLFM 123
Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
F RE +++ +ER +G R+ GGV+ ++ + +I +F +R ++ED+
Sbjct: 124 LCFRNREIVLDVFERTTGNRVLHGINLVGGVTRNIGPEMAQEIMDFCDTIEKRCRDLEDM 183
Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ +R R K +G+++ Q AL+Y G + R
Sbjct: 184 IVHSRTIKDRMKGVGILSKQTALDYSVVGPIAR 216
>UniRef50_A3DM94 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Staphylothermus marinus F1|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 375
Score = 124 bits (300), Expect = 2e-27
Identities = 71/219 (32%), Positives = 116/219 (52%)
Frame = +3
Query: 237 KVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 416
K + + + GPQHP A G + L LDGE V D G LHRG EK++EY+ + L
Sbjct: 3 KAKVLTVFLGPQHPGAPGNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDLVM 62
Query: 417 FDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 596
R+ E Y+ A+E++ I+ P +AKY+R + AE +RL +H++ + A +
Sbjct: 63 SARICVEDPDHIELTYTHAMEQIFGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAGPIA 122
Query: 597 ALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERI 776
A W RE+++++++ VSG R++ YI PGGV D+P + + I
Sbjct: 123 ARYATSWAIAAREEILKWFDYVSGHRIYHHYIFPGGVRWDIPSDFKEKTLKVLKVIKPLI 182
Query: 777 DEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
D++ D + I+ +R +D+G + DA+ G +G LR
Sbjct: 183 DDIRDGFFYHPIFEKRARDMGRLKPGDAIRLGATGPTLR 221
>UniRef50_Q9V0S5 Cluster: NuoD NADH dehydrognease I, subunit D; n=4;
Thermococcaceae|Rep: NuoD NADH dehydrognease I, subunit
D - Pyrococcus abyssi
Length = 394
Score = 112 bits (270), Expect = 1e-23
Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 4/227 (1%)
Frame = +3
Query: 225 PAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQ 404
P EK + FGPQH A ++L++DG V A + G LHRG EKL EY+ +
Sbjct: 23 PIEKDTYELF--FGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYT 79
Query: 405 ALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHA 584
+ R+ E YSLAV++++ +VP RA++IRT E+ R+ ++ + +
Sbjct: 80 NIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLS 139
Query: 585 LDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMP----LGLMDDIYEF 752
+G T W RE++M +E ++GAR++ Y PGGV D+P L + D E+
Sbjct: 140 FKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEY 199
Query: 753 SSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
++ + ++++ N I +R + IGV+ + AL G +G LR
Sbjct: 200 ---IKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLR 243
>UniRef50_Q57935 Cluster: Uncharacterized protein MJ0515; n=9;
Euryarchaeota|Rep: Uncharacterized protein MJ0515 -
Methanococcus jannaschii
Length = 380
Score = 112 bits (269), Expect = 1e-23
Identities = 60/210 (28%), Positives = 110/210 (52%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP HP LR+ L LDGE A+ +G +HRG EK++E K + + +R+ +
Sbjct: 11 GPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGIHLAERVCGICS 70
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
+ ++ +E + I++P +AKY+R + E+ R+ +H++A + L + T WL
Sbjct: 71 YVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLSIEHETLAMWLL 130
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
RE +M+ E ++G R++ Y GGV D+ +MD+IY+ F + + + +V T
Sbjct: 131 NVREIIMDLMEMITGNRVNMGYNVIGGVRRDINREMMDEIYKKLDIFEDELKNIIEVFET 190
Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ R+K+IG++ + + G + R
Sbjct: 191 GPLIALRSKEIGILPYHEVMRTRAVGPICR 220
>UniRef50_Q8RDB4 Cluster: NADH:ubiquinone oxidoreductase 49 kD
subunit 7; n=17; cellular organisms|Rep: NADH:ubiquinone
oxidoreductase 49 kD subunit 7 - Thermoanaerobacter
tengcongensis
Length = 360
Score = 111 bits (266), Expect = 3e-23
Identities = 68/211 (32%), Positives = 108/211 (51%)
Frame = +3
Query: 261 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 440
FGPQHP + L L ++ E V A P G +HRG E L++ + + Q + D + +
Sbjct: 9 FGPQHPVLPEPIHLKLIVEDEKVVEAYPAFGYVHRGLELLVKKRDFNQMVYVVDHICGIC 68
Query: 441 MMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWL 620
+ + Y AVEKL+ IDVP RAK++R ++AEI R+ +H++ G A G F
Sbjct: 69 SAIHGETYCQAVEKLIGIDVPERAKFLRVIWAEIHRIHSHLLWFGLLADAFGFENLFMLS 128
Query: 621 FEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLT 800
+ REK+M+ E +G R+ + GGV D+ + + E + E+E ++
Sbjct: 129 WRIREKVMDILEATAGNRVVISVNIVGGVRRDIDSEQAKWVLAQLKEVEEGLKEIEKIVR 188
Query: 801 TNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
N +RT IGV++ ++A G G LR
Sbjct: 189 DNYTLKKRTVGIGVLSKEEAYMLGAVGPTLR 219
>UniRef50_A7I491 Cluster: NADH dehydrogenase; n=2; cellular
organisms|Rep: NADH dehydrogenase - Methanoregula boonei
(strain 6A8)
Length = 359
Score = 108 bits (259), Expect = 2e-22
Identities = 62/217 (28%), Positives = 111/217 (51%)
Frame = +3
Query: 243 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 422
+ + + FGPQHP + L L L+ E V P IG +HRG EKL+E + Y + + +
Sbjct: 3 KQITVPFGPQHPVLPEPIHLDLVLEDERVVDVIPSIGYVHRGLEKLVEKREYPEYIYVAE 62
Query: 423 RLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGAL 602
R+ + + Y+ VE ++ I+VP RA+Y+RT++ E +RL +H++ +G A +G
Sbjct: 63 RICGICSYIHSNTYAECVEHIMKIEVPERAQYLRTIWTEYSRLHSHLLWLGLFADGMGFE 122
Query: 603 TPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDE 782
+ F ++ RE +++ E +G R+ + GGV D+ +D++ + I +
Sbjct: 123 SVFMNAWKLREHILDDLEATTGGRVIQGVCKIGGVRRDIAPEKLDEMVKGLRAMEPAIRD 182
Query: 783 VEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ +V + R K +G++ DA G G R
Sbjct: 183 LTNVFLNDASVSHRLKGVGILQKGDAYTLGAVGPTAR 219
>UniRef50_Q8U0Z6 Cluster: Mbh12 membrane bound hydrogenase alpha;
n=4; Thermococcaceae|Rep: Mbh12 membrane bound
hydrogenase alpha - Pyrococcus furiosus
Length = 427
Score = 103 bits (246), Expect = 8e-21
Identities = 63/221 (28%), Positives = 109/221 (49%), Gaps = 1/221 (0%)
Frame = +3
Query: 234 KKVRNMI-LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 410
KKV + + FGP HP + ++ LDGE + D +G RG + + + Y Q +
Sbjct: 2 KKVEYWVKIPFGPIHPGLEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIGMRRNYVQIM 61
Query: 411 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 590
+R+ + + Y AVE++ I+VP RA+YIR + E+ R+ +H++ +G D
Sbjct: 62 YLAERMCGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIVGELERIHSHLLNLGVVGHD 121
Query: 591 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAE 770
+G T + RE++M+ E VSG R++ + + GGV D+ I + + E
Sbjct: 122 IGYDTVLHLTWLARERVMDVLEAVSGNRVNYSMVTIGGVRRDIGEKQKRLILDMIKYYRE 181
Query: 771 RIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ ++EDV + R +D+ VV + A+ G G R
Sbjct: 182 VLPQIEDVFLHDSTIEARLRDVAVVPKKLAIEMGAVGPTAR 222
>UniRef50_P31895 Cluster: Carbon monoxide-induced hydrogenase; n=9;
Bacteria|Rep: Carbon monoxide-induced hydrogenase -
Rhodospirillum rubrum
Length = 361
Score = 101 bits (243), Expect = 2e-20
Identities = 68/211 (32%), Positives = 103/211 (48%), Gaps = 1/211 (0%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP H A + +E+DGE V + D G +HRG E L + Q + +R+ +
Sbjct: 9 GPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTERVCSLCS 68
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
+ Q Y +A+E + + VP RA+Y+R + E R+ +H+ V A VG + F +
Sbjct: 69 NSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFDSLFMHVM 128
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERI-DEVEDVLT 800
E RE M + E V G RM A + GGV D+ D K + DE+ +
Sbjct: 129 EAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLRDEIIPLYQ 188
Query: 801 TNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
TN V RT+ IGV++A D ++YG G + R
Sbjct: 189 TNPSIVDRTRGIGVLSAADCVDYGLMGPVAR 219
>UniRef50_A3DKH4 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Staphylothermus marinus F1|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 406
Score = 99 bits (238), Expect = 8e-20
Identities = 60/206 (29%), Positives = 103/206 (50%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GPQHPA H + L DGE + + + G HRG EKL E T+ + + R+ +
Sbjct: 18 GPQHPALHEPVLLKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRDIFIVARVCGICN 77
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
+ + CY A+E++L++ RAKY+R L E R+ +H++ A +G + F +
Sbjct: 78 LVHANCYVRALEEILDMHPNERAKYLRVLAMEFERVHSHMLINAVMAEIIGFDSLFMNIM 137
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
+RE +M+ E ++G R+ + Y+ GGV D+ D + + K R+ + +
Sbjct: 138 LDRENIMKAKEIITGNRVLSDYMMIGGVRRDIDSVKKDKLLKIIDKVLPRLHYYKKLFME 197
Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSG 881
+ ++R D+GV+ D Y F G
Sbjct: 198 DDTILKRLVDVGVIKRSDVTRYTFVG 223
>UniRef50_A1AUU6 Cluster: NADH dehydrogenase (Ubiquinone) precursor;
n=2; Pelobacter propionicus DSM 2379|Rep: NADH
dehydrogenase (Ubiquinone) precursor - Pelobacter
propionicus (strain DSM 2379)
Length = 409
Score = 97.5 bits (232), Expect = 4e-19
Identities = 58/210 (27%), Positives = 98/210 (46%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GPQHPA + + GE + +G HRG EK E ++Y Q L +R+ +
Sbjct: 9 GPQHPALKEPANFSITVTGEKIVTTSMRLGYNHRGIEKACEERSYLQCLYLLERICGICS 68
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
+ Y AVE++ + +P RA YIR+L E+ R+ +H++ +G ++G T + +
Sbjct: 69 HTHSTAYIQAVEEIAGLTIPPRANYIRSLVGELERIHSHLLWLGVAGHEIGFDTLLMYSW 128
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
+RE +M+ + G R++ GGV D+ ++ I + ER +V T
Sbjct: 129 RDRELVMDILAELGGNRVNYGINTLGGVRRDITPEQIEMIRNSVNTLEERTKYYIEVATE 188
Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
R +G ++ +DAL G LR
Sbjct: 189 EPTLAARLAGVGYLSHEDALLLSAVGPTLR 218
>UniRef50_Q2FTW4 Cluster: NADH dehydrogenase; n=2;
Methanomicrobiales|Rep: NADH dehydrogenase -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 409
Score = 97.5 bits (232), Expect = 4e-19
Identities = 55/209 (26%), Positives = 106/209 (50%)
Frame = +3
Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
L GP HPA + +++GE + D G HRG E + + Q L DR+
Sbjct: 10 LPIGPIHPALKEPINFTFQMNGEVIEKVDFAPGRAHRGIEWMGMRRNPVQILHLCDRICG 69
Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
+ + + ++ AVE++ +I+VP RA Y+RT+ AE R+ +HI+ G A ++G T F+
Sbjct: 70 ICGVHHALVFAQAVEQIADIEVPDRAYYVRTIIAEFERIQSHILWAGVAAHELGFDTLFY 129
Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
++ RE+ ++ E ++G R++ + GG D+ + + + + ++++ ++
Sbjct: 130 LAWQIREESVDVIEYITGNRVNYGIMMLGGTRRDITADMFPRLEQALQYYEGLLEKMVNL 189
Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSG 881
++ R KD G++T + AL G
Sbjct: 190 FLNDKTIAMRCKDTGILTKRRALELATVG 218
>UniRef50_Q0W6T4 Cluster: [NiFe]-hydrogenase, large subunit; n=1;
uncultured methanogenic archaeon RC-I|Rep:
[NiFe]-hydrogenase, large subunit - Uncultured
methanogenic archaeon RC-I
Length = 486
Score = 95.9 bits (228), Expect = 1e-18
Identities = 65/243 (26%), Positives = 112/243 (46%)
Frame = +3
Query: 165 MYPDESTKSLKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADP 344
M+ DE+ KP + V + +GP HPA + ++ E V+ AD
Sbjct: 86 MHTDEAAPEKKPQSIQASDHITTMPVST--IPYGPYHPAFIESNYFKMAVEDEVVKKADL 143
Query: 345 HIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIR 524
+G HR KL+E + Y + + +R+ + + + LAVE + + VP RA IR
Sbjct: 144 KLGFNHRSIIKLMERRDYYKDIYLAERVCGLCNAHHALSFCLAVENIGQVTVPKRADIIR 203
Query: 525 TLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGG 704
T+ E+ R+ +H+MA+G VG T RE + + E VSG R+ I GG
Sbjct: 204 TMICEMERIQSHLMAIGILGDLVGYKTMLMQFLRIREDIQDSLELVSGQRVTHGLITLGG 263
Query: 705 VSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGV 884
V D+ + + + + + + D + +N + + R K++GV+ ++A+ G G
Sbjct: 264 VRRDITPAQSNFVKRKLASLKKGVQTLYDEMLSNNVLIGRLKNVGVLPPEEAVRLGAVGP 323
Query: 885 MLR 893
R
Sbjct: 324 TAR 326
>UniRef50_A6DBV4 Cluster: Ech hydrogenase, subunit EchE, putative;
n=1; Caminibacter mediatlanticus TB-2|Rep: Ech
hydrogenase, subunit EchE, putative - Caminibacter
mediatlanticus TB-2
Length = 363
Score = 95.1 bits (226), Expect = 2e-18
Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 1/216 (0%)
Frame = +3
Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALPYFDR 425
+I+ FG QH A + + + E + D +G +HRG EK K +T R
Sbjct: 7 VIVPFGSQHIALPEPVSFLFTTENEVITDVDVDVGYVHRGIEKAAITKFEFTNVAYLLTR 66
Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 605
+ + + Y +EKLL +VP RA+YIR L E+ R+ +HI+A G A VG
Sbjct: 67 ICGFCSITHASGYHHGIEKLLGAEVPKRAEYIRMLVTELDRIHSHILANGHVAEVVGYEN 126
Query: 606 PFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEV 785
F REK ME E ++G R+ + GGV D+ +++++ + +K + + ++
Sbjct: 127 LFMQSVRYREKAMELLELITGNRIQYDIYKIGGVRKDLTPEIVEEVKKKLTKLKDEMLKI 186
Query: 786 EDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
D T+ + +TK I ++ A Y G + R
Sbjct: 187 YDFYDTDYTFGLKTKGISYISYDMAKEYNAVGPIAR 222
>UniRef50_A2Q588 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; Respiratory-chain NADH dehydrogenase, subunit 1;
n=2; core eudicotyledons|Rep: NADH-ubiquinone
oxidoreductase, chain 49kDa; Respiratory-chain NADH
dehydrogenase, subunit 1 - Medicago truncatula (Barrel
medic)
Length = 288
Score = 94.3 bits (224), Expect = 4e-18
Identities = 49/97 (50%), Positives = 61/97 (62%)
Frame = +3
Query: 225 PAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQ 404
PA +K MI+N GPQHP+ HGVLRL++ LDGE V +P +G LHRG EK+ E +T Q
Sbjct: 4 PATRKDL-MIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 405 ALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAK 515
LPY R DY++ M E E+L NI VP R K
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRMK 99
>UniRef50_A3CUR5 Cluster: NADH dehydrogenase; n=3;
Methanomicrobiales|Rep: NADH dehydrogenase -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 362
Score = 93.9 bits (223), Expect = 5e-18
Identities = 52/210 (24%), Positives = 108/210 (51%)
Frame = +3
Query: 234 KKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 413
KK ++ + GP HP +RL E GE V + +G + +G E+++ + + + +
Sbjct: 2 KKTVDVSIPLGPMHPCWKEPVRLKCETAGERVLKTELELGYMKKGIERIMRGRPWQEVMF 61
Query: 414 YFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDV 593
+R+ + + + + +E++ +I VP RA Y+R + E+ R+ +HI+A ++ +
Sbjct: 62 LAERVCGICSVVHNMVFIETMEEISDIPVPPRAAYLRVVVNELDRMASHILANFSYCYTI 121
Query: 594 GALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAER 773
T +L RE +++ ER++G+R++ AY+ PGGV D+ + +K E
Sbjct: 122 EHETLAMYLLNIRETVLDNLERITGSRINTAYMIPGGVRFDLLPEDAAALLADLAKVEEE 181
Query: 774 IDEVEDVLTTNRIWVQRTKDIGVVTAQDAL 863
+ + T + R+K IG ++ ++A+
Sbjct: 182 MKRYVRIFETGPLIALRSKGIGYMSREEAI 211
>UniRef50_A3DNE9 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Staphylothermus marinus F1|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 548
Score = 93.1 bits (221), Expect = 9e-18
Identities = 69/256 (26%), Positives = 118/256 (46%), Gaps = 5/256 (1%)
Frame = +3
Query: 141 VKQFEGPVMYPDESTKSLKPVPYNSIIKPAE---KKVRNMILNFGPQHPAAHGVLRLVLE 311
V +F P +P+ K V Y KP + + + GP HPA H L
Sbjct: 128 VHRFVLPDEWPEGIYPLRKDVEYTYRPKPRKVPRQPPTGQRIPIGPYHPALHEPEYFELY 187
Query: 312 LDGETVRAADPHIGLLHRGTEKLIEYKTYT-QALPYF-DRLDYVSMMCNEQCYSLAVEKL 485
++GE V + + +HRG EKL E + Q +P+ +R+ + + Y+++VE+
Sbjct: 188 VEGEKVVDVEYNGFHVHRGIEKLAEAPRFNYQKIPFLAERICGICGFVHSVSYTMSVERA 247
Query: 486 LNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVS 665
IDVP RA+YIR++ EI RL +H++ +G +G F + REK+M E ++
Sbjct: 248 AKIDVPERAEYIRSIILEIERLHSHLLWIGVVCHLLGYDAGFMHTWRIREKVMVLAELLT 307
Query: 666 GARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVV 845
G+R GGV D+ + ++ + + D++T+ V+R G++
Sbjct: 308 GSRKTYGINLVGGVRKDINMDKIEAVKNTIEYIRSEFKHLSDLITSISQIVKRASGTGIL 367
Query: 846 TAQDALNYGFSGVMLR 893
+ DA G + R
Sbjct: 368 SRDDARKLSVVGPVAR 383
>UniRef50_P16431 Cluster: Formate hydrogenlyase subunit 5 precursor;
n=50; Bacteria|Rep: Formate hydrogenlyase subunit 5
precursor - Escherichia coli (strain K12)
Length = 569
Score = 93.1 bits (221), Expect = 9e-18
Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 1/230 (0%)
Frame = +3
Query: 207 YNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIE 386
Y I + +KK N ++ GP H + L +DGE + AD + +HRG EKL E
Sbjct: 168 YEFINELGDKK--NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAE 225
Query: 387 YKT-YTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHI 563
+ Y + DR+ + + Y+ +VE + I VP RA+ IR + E+ RL +H+
Sbjct: 226 TRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHL 285
Query: 564 MAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDI 743
+ +G G + F F RE M+ E ++GAR GG+ D+ M
Sbjct: 286 LNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQT 345
Query: 744 YEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ + + + E+ DVL + QRT IG + + A ++ G M+R
Sbjct: 346 RQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR 395
>UniRef50_A1RWL3 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Thermofilum pendens Hrk 5|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit - Thermofilum
pendens (strain Hrk 5)
Length = 567
Score = 92.7 bits (220), Expect = 1e-17
Identities = 68/216 (31%), Positives = 97/216 (44%), Gaps = 1/216 (0%)
Frame = +3
Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALPYFDR 425
M + GP H A + + LDGE V D + +HRG EKL E + TY Q +R
Sbjct: 179 MQVPIGPVHAVADEPGQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAER 238
Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 605
+ + + Y AVE+ L I+VP RA YIRTL E+ RL +H++ +G G
Sbjct: 239 ICGICGYAHSCAYCQAVEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDW 298
Query: 606 PFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEV 785
F F+ REK+M E ++G R GGV D+ E + + V
Sbjct: 299 GFMAFFKAREKVMYMAELLTGGRKTYGMNVVGGVRRDITEDRAKKALEILKEVEKEYKAV 358
Query: 786 EDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
D + + V R KD+GV+ A G + R
Sbjct: 359 LDAVLSTSTLVSRAKDVGVLPRDVARKVSVVGPVAR 394
>UniRef50_Q9UYN4 Cluster: Hydrogenase 4, component G or formate
hydrogen lyase, subunit 5; n=1; Pyrococcus abyssi|Rep:
Hydrogenase 4, component G or formate hydrogen lyase,
subunit 5 - Pyrococcus abyssi
Length = 588
Score = 91.1 bits (216), Expect = 3e-17
Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 1/211 (0%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALPYFDRLDYVS 440
GP H L + GE + D HRG EK+ E + TY Q L +R+ +
Sbjct: 202 GPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGIC 261
Query: 441 MMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWL 620
+ Y++A+E+L ++++P RA+YIRTL E+ R+ NH++ VG A VG T F
Sbjct: 262 GYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHA 321
Query: 621 FEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLT 800
+ RE +M ER++G R GGV D+ ++I + E + +V+
Sbjct: 322 WRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVVL 381
Query: 801 TNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+++R + +G++ + A + G R
Sbjct: 382 NTNTFIKRAEGVGILPYKVAKEFSVLGPTAR 412
>UniRef50_Q8TY43 Cluster: Ni,Fe-hydrogenase III large subunit; n=1;
Methanopyrus kandleri|Rep: Ni,Fe-hydrogenase III large
subunit - Methanopyrus kandleri
Length = 409
Score = 88.6 bits (210), Expect = 2e-16
Identities = 52/210 (24%), Positives = 95/210 (45%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP HP LR+ L + GE V +G HRG EK++E + +A +R+ +
Sbjct: 32 GPNHPILKEPLRIKLAVRGEEVVDCKVEMGYCHRGIEKIMEGMPWQKAAFLAERVCGICS 91
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
+ C+ VEKL D R ++R L E+ R+ +H++A + + T F W
Sbjct: 92 HAHNMCFIGGVEKLAEGDPAPRGLFLRVLVQELDRIQSHLIANAAYFYSIEHETMFVWNM 151
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
RE++++ E ++G R+ + GGV +D+ ++++ E + + +
Sbjct: 152 NTRERVLDCIEEITGNRILTGWNVVGGVRMDVTEDQLNNVLETLDAIRDDVITYRRIAKN 211
Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ R++ +GV+T Y G R
Sbjct: 212 DPFIKLRSRGVGVITKDHIRKYRVVGPQAR 241
>UniRef50_Q0W2B9 Cluster: Hydrogenase, large subunit-like protein;
n=1; uncultured methanogenic archaeon RC-I|Rep:
Hydrogenase, large subunit-like protein - Uncultured
methanogenic archaeon RC-I
Length = 524
Score = 86.6 bits (205), Expect = 8e-16
Identities = 57/206 (27%), Positives = 98/206 (47%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP H + GE V + +G +H+G EK+ E TY + + +R +
Sbjct: 173 GPVHAGVIEPGHFRFSVAGEPVLMLEIRMGYVHKGIEKISESMTYDKGVFLSERTSGDNG 232
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
M + Y AVE+L I+VP RA+YIRT+F E+ R+ NH+ VG +LD +
Sbjct: 233 MAHSTAYCQAVEQLAGIEVPDRARYIRTVFLEMERIYNHLGDVGGISLDTAYNVGAQHAY 292
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
RE+M++ E ++G+R+ + + GGV D+ ++ I K + D++
Sbjct: 293 ILRERMLQLNECITGSRLLRSVNKIGGVRQDLTREDIEKIRTAIIKAKLDFKDFVDLVNR 352
Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSG 881
+ RT+ G + + A++ G
Sbjct: 353 QTSILDRTETTGKLPLEAAVSLNIVG 378
>UniRef50_Q6AB32 Cluster: Putative NADH dehydrogenase; n=1;
Propionibacterium acnes|Rep: Putative NADH dehydrogenase
- Propionibacterium acnes
Length = 396
Score = 86.2 bits (204), Expect = 1e-15
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 6/226 (2%)
Frame = +3
Query: 234 KKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 413
KK L+ G HP G++ + +D + + ++ ++G LHRG EKL E + Y Q
Sbjct: 36 KKYEVTRLDLGHLHPTRSGLVTIATTVDDDVIISSQVNVGTLHRGDEKLFEVRDYRQIPM 95
Query: 414 YFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNH---IMAVGTHA 584
R D+ + E + A+E + I +P R +IRTL AE +R+ +H + VG H
Sbjct: 96 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 155
Query: 585 LDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKF 764
D G E ++ ++R SG R+H R GG+ + E+
Sbjct: 156 DDAGLENAIATAIENARRI---WQRCSGNRIHPMITRIGGLRIHPE-------SEWQPAL 205
Query: 765 AERIDEVEDVLTTNRIWVQRT---KDIGVVTAQDALNYGFSGVMLR 893
E +D+ ++T R + T + + V+ YG SG + R
Sbjct: 206 GEWLDDANALVTRLRTALDATVGVRGVAVIPTNMIDRYGLSGPVSR 251
>UniRef50_P77329 Cluster: Hydrogenase-4 component G; n=19;
Bacteria|Rep: Hydrogenase-4 component G - Escherichia
coli (strain K12)
Length = 555
Score = 85.0 bits (201), Expect = 2e-15
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 1/209 (0%)
Frame = +3
Query: 252 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKT-YTQALPYFDRL 428
++ GP H + L +DGE + AD + +HRG EKL E + Y + DR+
Sbjct: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242
Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
+ + Y+ +VE L I+VP RA IR++ E+ RL +H++ +G VG T
Sbjct: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302
Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
F F REK M E + G+R GGV D+ + + + E+
Sbjct: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362
Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGF 875
++L QRT+ IG++ Q A + F
Sbjct: 363 EMLLATPNMEQRTQGIGILDRQIARDLRF 391
>UniRef50_Q2RXM4 Cluster: NADH-ubiquinone oxidoreductase; n=1;
Rhodospirillum rubrum ATCC 11170|Rep: NADH-ubiquinone
oxidoreductase - Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255)
Length = 561
Score = 82.6 bits (195), Expect = 1e-14
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 1/213 (0%)
Frame = +3
Query: 225 PAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQ 404
P + + I++ GP P L +GE + +D HRG EKL +
Sbjct: 167 PLGNESKATIISVGPFFPTLDEPAYFRLFCEGEEIIGSDYRGFFSHRGIEKLSDTVLDYN 226
Query: 405 ALPYF-DRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTH 581
+P+ +R+ + + CY +AVE I++P RAKYIR++ E+ RL +H++ +G
Sbjct: 227 QVPFMAERVCGICGFVHSACYCMAVEDAAGIEIPPRAKYIRSIMMELERLHSHLLWLGLA 286
Query: 582 ALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSK 761
+G T + RE +M E ++G R GGV D+ + D I +K
Sbjct: 287 GHYLGFDTVLMQSWRIREPIMWLVEEITGNRKTYGMNLVGGVRRDLDSAICDKIMAAVTK 346
Query: 762 FAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDA 860
+E+ + + R +GV++ +DA
Sbjct: 347 IGIECEELISAVAGDESLKMRMVKVGVLSHEDA 379
>UniRef50_Q1PZL4 Cluster: Similar to membrane-bound
[NiFe]-hydrogenase-3, large subunit; n=1; Candidatus
Kuenenia stuttgartiensis|Rep: Similar to membrane-bound
[NiFe]-hydrogenase-3, large subunit - Candidatus
Kuenenia stuttgartiensis
Length = 531
Score = 81.8 bits (193), Expect = 2e-14
Identities = 52/192 (27%), Positives = 89/192 (46%)
Frame = +3
Query: 318 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 497
G+++ D + H+GTEK+ E YT+AL +R+ V + Y A+EK+ I+
Sbjct: 197 GDSIFYLDAKLFFTHKGTEKIFETMPYTKALFLAERICGVCAASHATGYCQAIEKVAEIE 256
Query: 498 VPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARM 677
+P RA++IRT+ E+ R+ NHI VG L F RE + + E ++G R
Sbjct: 257 IPPRARFIRTIVMELERIYNHIGDVGNICAGTAFLLGIAHGFRIREYLQQLNETITGNRY 316
Query: 678 HAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQD 857
+ GGV D+ L I + + ++ ++ + + R + G ++ +
Sbjct: 317 LRGMLAIGGVRFDINDDLEKHILSLLNHVKKDFKDLTKMMFKSSSLLDRLETTGRLSEEI 376
Query: 858 ALNYGFSGVMLR 893
A G GV R
Sbjct: 377 ARGLGVVGVAAR 388
>UniRef50_Q24ST8 Cluster: Formate hydrogenlyase subunit 5; n=2;
Desulfitobacterium hafniense|Rep: Formate hydrogenlyase
subunit 5 - Desulfitobacterium hafniense (strain Y51)
Length = 554
Score = 75.8 bits (178), Expect = 1e-12
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 3/213 (1%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP H + GETV D + H+G EKL+E K + L +R+ V
Sbjct: 194 GPVHAGIIEPGHFRFQTIGETVLHLDAQLFYTHKGIEKLLEGKDLEEGLKIVERVCGVCA 253
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
+ + Y AVEKL ++VP RT+ AE+ RL NH+ +G VG
Sbjct: 254 VSHALAYCEAVEKLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCAGVGFALGNVNAL 313
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVED---V 794
+ +E++ ++ G R I PGGV +P G ++ + AE + E+ +
Sbjct: 314 QNKEQLQRLNHQLFGHRFLRGNITPGGVK-KIPQG--EERAYLQRRLAELEQDFEEWLPL 370
Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ + + QR GV++ Q AL+ G +G R
Sbjct: 371 IQEHDGFRQRAITTGVLSKQSALDLGVTGPAAR 403
>UniRef50_A1ASR5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Pelobacter propionicus DSM 2379|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit - Pelobacter
propionicus (strain DSM 2379)
Length = 557
Score = 75.8 bits (178), Expect = 1e-12
Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 1/212 (0%)
Frame = +3
Query: 261 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF-DRLDYV 437
FGP HP L +DGE VR + ++HRG EKL E +P +R+ +
Sbjct: 175 FGPFHPTLDEPEHFRLYVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERICGI 234
Query: 438 SMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFW 617
+ + AVE + VP RA++IRT+ EI RL +H M VG VG T F
Sbjct: 235 CGCVHSLAFCQAVENGAGVIVPPRAEFIRTIMLEIERLHSHPMWVGLACHLVGFDTLFMQ 294
Query: 618 LFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVL 797
+ RE +M E+++G R GGV D L+ + K +V +
Sbjct: 295 AWRIREPIMWLAEKITGNRKTYGLGIIGGVRWDFTPELIAETRAVLDKLESEWRQVVAAV 354
Query: 798 TTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ ++ + RT +G+ G G + R
Sbjct: 355 SKDKNIMARTSGVGMADKALCKEMGLVGPVAR 386
>UniRef50_Q3ZW31 Cluster: Hydrogenase, group 4, HycE subunit; n=3;
Dehalococcoides|Rep: Hydrogenase, group 4, HycE subunit
- Dehalococcoides sp. (strain CBDB1)
Length = 526
Score = 75.4 bits (177), Expect = 2e-12
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 1/193 (0%)
Frame = +3
Query: 318 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 497
GE + + + HRG EKL K L + + N YS AVE + +
Sbjct: 196 GEPILNLEVRLFYTHRGLEKLAMGKDIDFGLKIAEGISGDESAANTYAYSSAVEHICSSR 255
Query: 498 VPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARM 677
P RA+ +R + E+ RL +H+ + DVG L RE++M + +R++G+R
Sbjct: 256 PPRRAEQLRLILLEMERLYSHLADLSGMLTDVGYPVGAASLSALREELMRWNKRLTGSRF 315
Query: 678 HAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDE-VEDVLTTNRIWVQRTKDIGVVTAQ 854
I PGG+ D+P L+ ++ ++ F R E VE L + V R + G+V +
Sbjct: 316 LKGIIAPGGLLKDIPGELITELADYLYAFEGRFSEQVEKALAKTSV-VDRFETTGIVNNR 374
Query: 855 DALNYGFSGVMLR 893
+ +GV R
Sbjct: 375 LLIPLNITGVTAR 387
>UniRef50_Q0BPG8 Cluster: Formate hydrogenlyase subunit 5; n=1;
Granulibacter bethesdensis CGDNIH1|Rep: Formate
hydrogenlyase subunit 5 - Granulobacter bethesdensis
(strain ATCC BAA-1260 / CGDNIH1)
Length = 517
Score = 74.5 bits (175), Expect = 3e-12
Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 2/215 (0%)
Frame = +3
Query: 81 AVHNVNSQR--DGHRWFPDPDFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRNMI 254
A H V+S+ D RW P + GP + P E + P+ S + +
Sbjct: 102 AEHGVDSRPWLDHGRW-PISAPLSPRPGPPLPPPEQAEWRMTSPFASSFVSSRPDIALHE 160
Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
+ GP HP +L L L G +R A+ +G HRG + L+ K A+ R+
Sbjct: 161 RSIGPVHPLMREPAQLRLHLHGTLIRQAEWRLGYTHRGIQWLMRGKPLRDAIRIAARITG 220
Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
+ + + ++ A E L ++ P RA +R L E+ R H+ + A GA T
Sbjct: 221 DAALAHGLAFARAAEAALRLEPPPRALLLRGLMNELERCAVHLHVLAATASAAGADTYAA 280
Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDM 719
L RE+++ + G RM + PGGV D+
Sbjct: 281 KLSAWRERLLRAIQEAFGNRMMIDLLIPGGVLTDL 315
>UniRef50_A0UXP1 Cluster: NADH dehydrogenase; n=1; Clostridium
cellulolyticum H10|Rep: NADH dehydrogenase - Clostridium
cellulolyticum H10
Length = 530
Score = 73.3 bits (172), Expect = 8e-12
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 1/207 (0%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP H + GE + + + +HRG EKL E + Y + L + +R+
Sbjct: 177 GPVHAGIIEPGHFRFSVAGEPIINLEAKLYYVHRGLEKLCENQHYMKVLLFSERISGDET 236
Query: 444 MCNEQCYSLAVEKLLNID-VPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWL 620
N + A+EKL I +P RA Y R LFAE+ R+ H+ + +D + P
Sbjct: 237 FTNSLAFCQAIEKLNGITYIPERAVYSRVLFAELERICGHLGDIQGLCVDTAYIFPSGQF 296
Query: 621 FEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLT 800
R + E+++G+R +PGG+ D I E +K + E ++
Sbjct: 297 AMMRRWIQLLNEQLTGSRFLRNTNKPGGLRRDFVRSNEKIILECINKLDKEFKETVAIIK 356
Query: 801 TNRIWVQRTKDIGVVTAQDALNYGFSG 881
N +++ R + G++ A++ G
Sbjct: 357 NNGMFIDRVEHTGILENSIAVDLNVVG 383
>UniRef50_Q10884 Cluster: POSSIBLE FORMATE HYDROGENASE HYCE; n=10;
Actinomycetales|Rep: POSSIBLE FORMATE HYDROGENASE HYCE -
Mycobacterium tuberculosis
Length = 492
Score = 72.5 bits (170), Expect = 1e-11
Identities = 58/210 (27%), Positives = 88/210 (41%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP H + GET+ + +HRG EKL + T A+ +R+ +
Sbjct: 148 GPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTS 207
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
+ +SLA+E L I++P +R L E+ RL NH +G A DVG
Sbjct: 208 AAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQ 267
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
RE ++ V+G R+ IR GGV+ L + D E ++ A + EV +
Sbjct: 268 RIRENLLRRNAAVTGHRLLRGAIRAGGVA----LRALPDTDELAA-LAVDLAEVATLTLA 322
Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
N + R V+ DA G G + R
Sbjct: 323 NSVVYDRFAGTAVLHPDDASALGCLGYVAR 352
>UniRef50_Q58433 Cluster: Uncharacterized protein MJ1027; n=6;
Methanococcales|Rep: Uncharacterized protein MJ1027 -
Methanococcus jannaschii
Length = 377
Score = 72.5 bits (170), Expect = 1e-11
Identities = 54/202 (26%), Positives = 99/202 (49%), Gaps = 3/202 (1%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP HP RL L ++ E ++ A+ IG+ +RG E ++E + +++ +
Sbjct: 13 GPVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEGLPPEKISILSEKICGICS 72
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDV-GALTPFFWL 620
+ C E+ +I+VP RA+YIR + E+ RL +H++ G HA +V G T F
Sbjct: 73 HIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFG-HAFEVLGFETMAFRA 131
Query: 621 FEEREKMMEFYERVSGARMHAAYIRPGGV--SLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
F RE +M+ ++G R + GG+ ++ + + E KF E + ++ +
Sbjct: 132 FMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNIKESKIPALLERLEKFEENLKKLLER 191
Query: 795 LTTNRIWVQRTKDIGVVTAQDA 860
+ + + R KD+GV+ + A
Sbjct: 192 TVNDPMIMSRIKDVGVLDKKTA 213
>UniRef50_Q0F384 Cluster: Hydrogenase subunit; n=1; Mariprofundus
ferrooxydans PV-1|Rep: Hydrogenase subunit -
Mariprofundus ferrooxydans PV-1
Length = 532
Score = 71.7 bits (168), Expect = 2e-11
Identities = 47/192 (24%), Positives = 85/192 (44%)
Frame = +3
Query: 318 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 497
GE + + +G +H+G E+ ++ K+ + L R+ S + + ++ A E ID
Sbjct: 199 GEHILNMEERLGYVHKGIERAMQSKSAEEGLKVASRISGDSTVAHAWAFAQACEYAGQID 258
Query: 498 VPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARM 677
VP RA +IR + E R+ NHI +G D + RE M + + G R+
Sbjct: 259 VPRRASFIRAILCERERIANHIGDIGAVCNDAAFAFMLHQMHRLREDMARLHLELFGHRL 318
Query: 678 HAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQD 857
+ PGGV +D+ + + E + A ++ + + + R G+V +D
Sbjct: 319 LMNTLIPGGVLVDLGERAIGLLREQTLAIANEVEHLRAIYADHPSIQGRVIGSGMVPVED 378
Query: 858 ALNYGFSGVMLR 893
A + G G + R
Sbjct: 379 AQDIGLLGYVGR 390
>UniRef50_UPI00015BC86A Cluster: UPI00015BC86A related cluster; n=1;
unknown|Rep: UPI00015BC86A UniRef100 entry - unknown
Length = 420
Score = 70.9 bits (166), Expect = 4e-11
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 8/197 (4%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP H L GE + + H+G EKL E KT + L +R+
Sbjct: 76 GPIHAGIIEPGHFRFTLIGEPILKLEIRHFYKHKGIEKLSEGKTPEEGLKLSERISGDHS 135
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
+ + + AVEK+ +ID+P +A+YIR + E+ RL+ ++ DVG +F
Sbjct: 136 VAHSLAFVKAVEKIYDIDIPPKARYIRAILLELERLMCNLNDFAFIFQDVGYSFGAQKVF 195
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMP-------LGLMDDIY-EFSSKFAERID 779
+E +M E ++G R + I+ GGVS ++ LGL++ Y ++ F
Sbjct: 196 ALKEMLMRLNETLTGNRFNRNIIKIGGVSKELDTNAIKEVLGLLEKEYLKYKKLFLNSST 255
Query: 780 EVEDVLTTNRIWVQRTK 830
+E TT RI+ + K
Sbjct: 256 VLERTDTTGRIFYETAK 272
>UniRef50_Q8THY6 Cluster: Hydrogenase-3, subunit E; n=4;
Methanomicrobia|Rep: Hydrogenase-3, subunit E -
Methanosarcina acetivorans
Length = 545
Score = 69.3 bits (162), Expect = 1e-10
Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 3/213 (1%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP H + GE + + + + HRG EKL E K+ ++ + + +
Sbjct: 181 GPVHAGIIEPGHFRFSVIGEPIFSLEIRLFYKHRGIEKLAEGKSPSECVALAEAVSGDES 240
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG---ALTPFF 614
M N + +AVE+ I VP RA+ +R + E+ R+ + + + A+DVG +PF
Sbjct: 241 MANATGFCMAVEQACGISVPERAERLRAIMLELERIYSLLGDLAGMAVDVGFALVASPFS 300
Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
L RE++ E+++G+R GG+ D+P + ++ F KF+ + D
Sbjct: 301 IL---REEVFRQNEKLTGSRFLRGITVLGGLKKDIPDSALKELPAFLEKFSRAFESAYDR 357
Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
++ + R GV+ + +G + R
Sbjct: 358 AMSSSSLIDRFATTGVIKKELVSPLNLTGPLAR 390
>UniRef50_Q9V2X7 Cluster: Hydrogenase large subunit; n=4;
Methanobacteriaceae|Rep: Hydrogenase large subunit -
Methanobacterium thermoformicicum
Length = 376
Score = 69.3 bits (162), Expect = 1e-10
Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 2/215 (0%)
Frame = +3
Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
+ G H AA R+ L ++ E VR A+ +G+ HRG E+++E +A +++
Sbjct: 12 ITMGTVHSAAIEPYRVRLFVEDEIVRDAEITVGVNHRGIERIMEGLPVEKANSLTEKVCG 71
Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
+ + L EK L +++P RA YIR + E+ R+ +H++ + +G T
Sbjct: 72 ICSGVHLWNSILVAEKGLGVEIPERASYIRIIVGELERIHSHLLYLAHGNEVLGHETFSM 131
Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLM--DDIYEFSSKFAERIDEVE 788
LF RE +ME + G R+ GG+ L M I E E+++
Sbjct: 132 RLFYIRETVMELLRLIGGNRVQYGVPIIGGIRPRADLDEMKTQRISEGMDFIEEKVEAFA 191
Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ T++ + + R + ++ +DAL +G LR
Sbjct: 192 ERFTSDPMVMSRITGVCPISRKDALRLHVTGPTLR 226
>UniRef50_Q89GK2 Cluster: Blr6343 protein; n=11;
Alphaproteobacteria|Rep: Blr6343 protein -
Bradyrhizobium japonicum
Length = 503
Score = 67.3 bits (157), Expect = 5e-10
Identities = 55/210 (26%), Positives = 82/210 (39%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP H GETV + +G H+G E L+ +A+ R+ S
Sbjct: 153 GPVHAGIIEPGHFRFTASGETVARLEQRLGYTHKGIEGLMTGANLERAVQLAGRVSGDST 212
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
+ +S A E L + VP RA ++R L AE+ RL NH+ +G D
Sbjct: 213 VAYAFAFSRAAEAALQLVVPDRAAWLRALLAELERLANHLGDIGAICNDASFTLMHALCG 272
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
RE ++ + G R+ I PGGV+ D+ + I R + ++
Sbjct: 273 VLRESILRASDTAFGHRLMRDIIVPGGVTRDLTEEGREIIRTTLHTIRLRFPALVELYDN 332
Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
RT D GV+ A A Y G + R
Sbjct: 333 TASLQDRTVDTGVLKAALARQYAVGGYVGR 362
>UniRef50_A5FW46 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Acidiphilium cryptum JF-5|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Acidiphilium cryptum (strain JF-5)
Length = 476
Score = 64.9 bits (151), Expect = 3e-09
Identities = 60/221 (27%), Positives = 93/221 (42%), Gaps = 7/221 (3%)
Frame = +3
Query: 252 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 431
+L FGP GE + PH+ L HRG E +T L +R+
Sbjct: 123 VLPFGPVRAGVVESAEFSFFYVGEAILHYVPHLFLKHRGMEDRFVDQTPETGLVLAERVS 182
Query: 432 YVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPF 611
V + + Y+ A+E + VP RA+Y R + AE+ RL NH+ +G H D L
Sbjct: 183 GVGSVAHALAYAQAMEAAAQVAVPGRARYQRVIVAELERLYNHLHYLG-HLADTTTLKVA 241
Query: 612 F---WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPL----GLMDDIYEFSSKFAE 770
L ER K + RV+G+R I PGG+ ++ + G +D + ++
Sbjct: 242 HAEGALLAERVK--QIGARVTGSRFLRGVIAPGGLRRELRVEGLAGALDALRAPIRRYIA 299
Query: 771 RIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
R+D E R GV+ + A + G +G + R
Sbjct: 300 RLDASES-------HFDRLATTGVLPREVAFDQGATGPVAR 333
>UniRef50_Q0LPD5 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Herpetosiphon aurantiacus ATCC 23779|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Herpetosiphon aurantiacus ATCC 23779
Length = 368
Score = 64.1 bits (149), Expect = 5e-09
Identities = 49/214 (22%), Positives = 88/214 (41%)
Frame = +3
Query: 252 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 431
+L GP HP +R+VL ++GE + + G +RG + + T Q L +
Sbjct: 14 VLPLGPFHPDWQTPMRMVLRVEGEQIADVEFRDGYTNRGISERLTRTTIPQGLHLVSHIC 73
Query: 432 YVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPF 611
+ + LA+E+LL I+ RA +R L E+ R H+ + +G
Sbjct: 74 AADSHAHSLGFCLALEQLLKINASERAAALRLLACEVERATVHLSTMKEVLTILGLQRDA 133
Query: 612 FWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVED 791
+ + + E + + G YI PGGV D+ + + + + D
Sbjct: 134 EHVQKLHHGLFEVMQHLCGTSSPPNYIVPGGVRQDLSSTEQESMALQFRRLERLMYRFVD 193
Query: 792 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+R ++R +GV++ + A +G G M R
Sbjct: 194 RFIDHRGVLRRCVGVGVLSREAAEQFGVRGPMAR 227
>UniRef50_Q3JMD7 Cluster: Hydrogenase subunit; n=8; pseudomallei
group|Rep: Hydrogenase subunit - Burkholderia
pseudomallei (strain 1710b)
Length = 567
Score = 62.9 bits (146), Expect = 1e-08
Identities = 51/210 (24%), Positives = 79/210 (37%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP H + GE V + +G HRG E+L E R+ S
Sbjct: 189 GPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIAGDST 248
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
+ Y +A+E+ L I VP RA +R L E R+ NH+ +G D G
Sbjct: 249 VAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGLAHFS 308
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
+E + +R+ G R I PGGV+ D+ I + + ++ +
Sbjct: 309 RLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQTIYDD 368
Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
R G + AQ ++G G+ R
Sbjct: 369 QSGLQDRFAGTGRLDAQAVAHFGVCGLAAR 398
>UniRef50_UPI000155B933 Cluster: PREDICTED: similar to NADH
dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase), partial; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to NADH
dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase), partial - Ornithorhynchus
anatinus
Length = 127
Score = 61.3 bits (142), Expect = 3e-08
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Frame = +3
Query: 171 PDESTKSLKPVPYN--SIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGE 323
P S L+ P + + P E+KV N+ LNFGPQHPAAHGVLRLV+EL GE
Sbjct: 74 PPASAPELRGSPPDPADVDPPKERKVANVTLNFGPQHPAAHGVLRLVMELSGE 126
>UniRef50_Q609T9 Cluster: Hydrogenase subunit; n=1; Methylococcus
capsulatus|Rep: Hydrogenase subunit - Methylococcus
capsulatus
Length = 527
Score = 58.8 bits (136), Expect = 2e-07
Identities = 45/192 (23%), Positives = 80/192 (41%)
Frame = +3
Query: 318 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 497
GETV + +G +H+G EKL + R+ + + + A+E +
Sbjct: 194 GETVLNLEERLGYVHKGIEKLAVGRDPEGLARLAGRVSGDTTVGHAWAACQAMEHAAGVA 253
Query: 498 VPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARM 677
P RA ++R +F E R+ NH+ +G D RE + R G R+
Sbjct: 254 PPERALWLRAIFIERERVANHLNDIGAICNDTAFAFGHSQFSRLRELWLRDNLRWFGHRL 313
Query: 678 HAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQD 857
I PGGV++D+P + + ++E++ +L + I+ R GV++ +
Sbjct: 314 LMDRIVPGGVAVDLPAEATSAMPAAMAALRSELEELKPILDESTIFQDRVVGAGVLSERI 373
Query: 858 ALNYGFSGVMLR 893
G G + R
Sbjct: 374 VRELGCLGYVAR 385
>UniRef50_A0H1B0 Cluster: Ni Fe-hydrogenase III large subunit-like;
n=2; Chloroflexus|Rep: Ni Fe-hydrogenase III large
subunit-like - Chloroflexus aggregans DSM 9485
Length = 365
Score = 57.2 bits (132), Expect = 5e-07
Identities = 42/143 (29%), Positives = 67/143 (46%)
Frame = +3
Query: 465 SLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMM 644
SLA+E L I PLRA+ IR + AE+ R +H+ + +G L L + ++
Sbjct: 74 SLALEALAEITAPLRAQAIRVIVAELERAASHMNTLAALIAALG-LNSATRLSQLETRIR 132
Query: 645 EFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQR 824
+ G AAYIRPGG++ + D ++ + E+ + R V R
Sbjct: 133 SILLALLGHH-EAAYIRPGGLAEPPDEARLADTERAINELLPHMIELAEQTIPRRTLVAR 191
Query: 825 TKDIGVVTAQDALNYGFSGVMLR 893
DIGV+T + A +G +G + R
Sbjct: 192 MVDIGVLTTEAARQFGLAGPLGR 214
>UniRef50_A6UVJ6 Cluster: Hydrogenase, component E-formate
hydrogenlyase subunit 5-like protein; n=1; Methanococcus
aeolicus Nankai-3|Rep: Hydrogenase, component E-formate
hydrogenlyase subunit 5-like protein - Methanococcus
aeolicus Nankai-3
Length = 518
Score = 57.2 bits (132), Expect = 5e-07
Identities = 61/233 (26%), Positives = 97/233 (41%), Gaps = 6/233 (2%)
Frame = +3
Query: 114 HRWFPDPDFVKQFEG-PVMYPDESTKSLKPVPYN-SIIKPAEKKVRNMILNFGPQHPAAH 287
H W + K ++G P ++ + T P+P N + +++ + + GP H
Sbjct: 110 HPWLKSVRYHKNYKGAPDVFGNNYTA---PIPGNYPFYEVGGEEIHQVAV--GPVHAGII 164
Query: 288 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF-DRLDYVSMMCNEQCY 464
GET+ + + G HRG EK I + LP + + +++ N C+
Sbjct: 165 EPGHFRFNCIGETILSLEIQHGYQHRGIEKQI-LNCKKEVLPLIIESIAGDTVIGNSICF 223
Query: 465 SLAVEKLLNIDVPLRAKYI--RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREK 638
S A+E L N + R L EI R+ NHI +G A DVG + + R
Sbjct: 224 SEAIEWLSNCNYEANEPLYNYRRLLLEIERIANHIGTMGGLAGDVGYIPTASYYGRIRGD 283
Query: 639 MMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDD-IYEFSSKFAERIDEVEDV 794
+ + + G R + +RP G P L DD I E +F + EV DV
Sbjct: 284 FLNMFVLICGNRFGRSSVRPFGA----PFKLSDDHIKELIKRFEQLKKEVIDV 332
>UniRef50_Q6APF2 Cluster: Related to hydrogenase, component
E-formate hydrogenlyase subunit 5; n=1; Desulfotalea
psychrophila|Rep: Related to hydrogenase, component
E-formate hydrogenlyase subunit 5 - Desulfotalea
psychrophila
Length = 509
Score = 56.8 bits (131), Expect = 7e-07
Identities = 61/259 (23%), Positives = 100/259 (38%), Gaps = 1/259 (0%)
Frame = +3
Query: 108 DGHRWFPDPDFVKQFEGPV-MYPDESTKSLKPVPYNSIIKPAEKKVRNMILNFGPQHPAA 284
DGH W + K + G ++ + K P Y E + + + GP H
Sbjct: 106 DGHPWLKMVRYHKNYAGAKDVFGNNYGKENIPGNYPFFSVEGES-IHEVAV--GPVHAGI 162
Query: 285 HGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCY 464
+ GE V + +G HRG EK++ + + + + + +
Sbjct: 163 IEPGHFRFQCAGEEVLHLEIQLGYQHRGIEKMLPTLPQKRFPIICESIAGDTSIGHGLSM 222
Query: 465 SLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMM 644
A+E L I V AK IRT E+ R+ NHI +G A D P + R + +
Sbjct: 223 CQAIEGLAGISVDRGAKIIRTTALELERICNHIGDLGALAGDAAFNPPAAYFGRIRGEFL 282
Query: 645 EFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQR 824
+ +SG R +RPGGV+ M I E + I+ + D++ + R
Sbjct: 283 NLLQVLSGNRFGKGLVRPGGVTHIMREEQRKLIREKLLEVTGEIENICDLIFSAHTVQAR 342
Query: 825 TKDIGVVTAQDALNYGFSG 881
+ G V + A + G G
Sbjct: 343 FEHTGTVQHEMAKDLGLVG 361
>UniRef50_Q5P2H0 Cluster: Subunit of formate hydrogenlyase-like
membrane complex, related to large subunit of
hydrogenases; n=8; Betaproteobacteria|Rep: Subunit of
formate hydrogenlyase-like membrane complex, related to
large subunit of hydrogenases - Azoarcus sp. (strain
EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 551
Score = 56.4 bits (130), Expect = 9e-07
Identities = 46/207 (22%), Positives = 75/207 (36%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP H + GE V + G H+G E+ + R+ S
Sbjct: 201 GPVHAGTIEPGHFRFSVVGEKVLRLEERFGYTHKGIERRFMGMDIDEGARLAGRVSGDST 260
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
+ Y++A E + VP RA ++R L E R+ NH+ +G D
Sbjct: 261 VAYAWAYAMAAESAAGVAVPERAAWLRALLLERERVANHLGDLGALGNDAAFGFALAQFS 320
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
RE + G R+ IRPGGV+ D+ + + + E++D+
Sbjct: 321 RLREDWLRANFEAFGHRLLMDCIRPGGVARDLDAAAAAQLRRDAVALVAEVAELKDIYDE 380
Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGV 884
+ R G V + A G +G+
Sbjct: 381 HAGLQDRFVTTGRVAPELAARLGLTGL 407
>UniRef50_A3ETD4 Cluster: Ni,Fe-hydrogenase III large subunit; n=1;
Leptospirillum sp. Group II UBA|Rep: Ni,Fe-hydrogenase
III large subunit - Leptospirillum sp. Group II UBA
Length = 496
Score = 54.4 bits (125), Expect = 4e-06
Identities = 46/210 (21%), Positives = 82/210 (39%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP H ++ GE V + +G H+G L+ ++ R+ S
Sbjct: 145 GPVHAGIIEPGHFRFQVVGEKVLRMEERLGYTHKGIRGLLAHRPVGDVTRLSSRISGDSA 204
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
+ + ++ AVE P RA ++R + E R+ NH+ +G D G
Sbjct: 205 VAFQWAWAQAVECATQTSPPERAVWLRAILLERERIANHLGDLGALGNDAGFAFGLVQFG 264
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
+E ++ ++ G R I PGGV++D G + + + E I ++ +
Sbjct: 265 RLKEDLLRTNGQIFGHRYLMDTICPGGVAVDPGDGALSRLRSELPRLQEEIHVLKTIYDE 324
Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ R GV+ A +G GV+ R
Sbjct: 325 HGGLQDRFAGTGVLDPLLAGAWGLGGVVGR 354
>UniRef50_Q8EYD9 Cluster: Hydrogenase-3 component E; n=4;
Leptospira|Rep: Hydrogenase-3 component E - Leptospira
interrogans
Length = 466
Score = 53.6 bits (123), Expect = 6e-06
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 8/216 (3%)
Frame = +3
Query: 264 GPQHPAA--HGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYV 437
GP H G R +++ GE +R+ D +G RG LI+ K ++PY + +
Sbjct: 110 GPIHAGVIEPGHFRFIVK--GEEIRSLDIRLGFQKRGLIDLIKGKGPKDSIPYAEAISGD 167
Query: 438 SMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFW 617
S + +S E+ NI VP + R + E+ R+ HI +G A D+G
Sbjct: 168 STISYAIAFSRIFEEAQNIAVPQELDFARLVLLELERVATHIGDMGAIAGDIGYYPLQGV 227
Query: 618 LFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVL 797
+R + E ++G R + PG + L + + E S + +EV
Sbjct: 228 CSLQRGIPLGVMEALTGNRFGRGALSPGKIFFRKGLD-RNKLKELSERIRSVTEEVVGHF 286
Query: 798 ------TTNRIWVQRTKDIGVVTAQDALNYGFSGVM 887
+TNR +R + GV+ + + GF G++
Sbjct: 287 ERAAGRSTNR---ERLQSCGVIRQKQVRHLGFIGMV 319
>UniRef50_A0LSU1 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Acidothermus cellulolyticus 11B|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
Length = 499
Score = 52.4 bits (120), Expect = 2e-05
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 8/174 (4%)
Frame = +3
Query: 219 IKPAEKKVRNMILNFG----PQHPAAHGVLRLV---LELDGETVRAADPHIGLLHRGTEK 377
+ P E + + +L G P P GV V +E GE + + HRG E+
Sbjct: 121 LTPDEAAIPSRVLGHGVFTIPHGPVRSGVYESVEYLVETPGEDIPYVGIRVFAKHRGIER 180
Query: 378 LIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLN 557
E + + +R++ ++ + + + AVE L + R + +R +FAE+ R+ N
Sbjct: 181 RFEDLDVSDGVLLAERVEGIASVAHALAFCHAVEDLAGVIPSPRDRSVRVIFAELERIAN 240
Query: 558 HIMAVGTHALDVGALTPFFWLF-EEREKMMEFYERVSGARMHAAYIRPGGVSLD 716
H + V D L F +E+++ G+R + PGG+ +
Sbjct: 241 H-LDVALKLADAAGLAVAVSRFGYHKERILRLIGAACGSRFGRGVVVPGGIGCE 293
>UniRef50_A7HGW8 Cluster: NADH-ubiquinone oxidoreductase chain
49kDa; n=11; Bacteria|Rep: NADH-ubiquinone
oxidoreductase chain 49kDa - Anaeromyxobacter sp.
Fw109-5
Length = 515
Score = 50.8 bits (116), Expect = 5e-05
Identities = 38/152 (25%), Positives = 64/152 (42%)
Frame = +3
Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
GP H + GE V + +G HRG E ++ ++L + + ++
Sbjct: 164 GPVHAGIIEPGHFRFQCHGEQVFHLEIVLGYQHRGIEPMLAGGPDRRSLALVESIAGDTV 223
Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
+ + + A+E L P RA +R + E+ RL NH+ +G A DVG L +
Sbjct: 224 VGHGLAHVKALESLAGRPPPARAMALRGVALELERLANHVGDLGALAGDVGFLPTASYCG 283
Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDM 719
R + + + G R + PGGV D+
Sbjct: 284 ALRAEFLNATAEICGNRFGRGLLVPGGVRFDL 315
>UniRef50_A5UWP3 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=2; Roseiflexus|Rep: NADH-ubiquinone
oxidoreductase, chain 49kDa - Roseiflexus sp. RS-1
Length = 358
Score = 50.4 bits (115), Expect = 6e-05
Identities = 46/213 (21%), Positives = 79/213 (37%)
Frame = +3
Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
L GP HPA G R +L + + V + G RG + + AL R+
Sbjct: 5 LALGPFHPAWLGPQRFILHIADDRVVDVEYQNGFNERGCAERLPRLPLPDALHLVARICG 64
Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
+ + A+E++ V RA +R AE+ R H+ +G
Sbjct: 65 ECSFAHSLAFCQAIEQVQRRKVGARAALLRVAIAELERTAAHLYTARAVLDAIGMEQRGA 124
Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
L ++ + V+G R+ PGG+ D+ ++ + + D
Sbjct: 125 ILDHFCQQSRDMLALVTGGRIPPPVCAPGGLLRDLTPVERQEVLAMLPGMSADLYRFIDR 184
Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
L R + RT ++GV+ A +G G + R
Sbjct: 185 LIDQRFLLMRTVEVGVLPRAAAEQFGVRGPLAR 217
>UniRef50_Q4X2T6 Cluster: Putative uncharacterized protein; n=1;
Plasmodium chabaudi|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 152
Score = 43.2 bits (97), Expect = 0.009
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +2
Query: 329 PCSRSSHRSPAPWY*KTDRIQDIHPSPAVLRPSGLRVHDV 448
P R +HR A + K R QD+HP A+ P GLRVHDV
Sbjct: 113 PACRPAHRPVASRHRKAGRAQDLHPGAALHGPPGLRVHDV 152
>UniRef50_Q97ZA7 Cluster: Formate hydrogenlyase subunit 5; n=2;
Sulfolobaceae|Rep: Formate hydrogenlyase subunit 5 -
Sulfolobus solfataricus
Length = 391
Score = 42.7 bits (96), Expect = 0.012
Identities = 39/201 (19%), Positives = 83/201 (41%)
Frame = +3
Query: 261 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 440
+GP ++ ++ +GE + D + ++ E +I T AL +R++
Sbjct: 51 YGPSAGGLLETIKFIITTNGEKILGIDAEV---YKNREIVISGLTVDDALLRVERINAPF 107
Query: 441 MMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWL 620
+ + LAVE L ++ + R E+ R+ NH+ + P + L
Sbjct: 108 SASHTISFLLAVEDSLELEQDYPTQLKRIAEIELERIRNHLFVISRLTETTSLNVPTYHL 167
Query: 621 FEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLT 800
EK+ ++ G R GV+ D G + I + + +F ++ D L
Sbjct: 168 LHLVEKVNRLIGKMCGHRYFFGVNAINGVNCD--FGNLLRIIDITKEF----KQIFDGLL 221
Query: 801 TNRIWVQRTKDIGVVTAQDAL 863
+RI++ R ++ G + ++++
Sbjct: 222 ESRIFIDRLQENGKIIDENSI 242
>UniRef50_A6Q6W4 Cluster: Ni-Fe hydrogenase, large subunit HycE;
n=2; unclassified Epsilonproteobacteria|Rep: Ni-Fe
hydrogenase, large subunit HycE - Sulfurovum sp. (strain
NBC37-1)
Length = 455
Score = 42.3 bits (95), Expect = 0.016
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 1/179 (0%)
Frame = +3
Query: 360 HRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAE 539
+RG EK++E KT +A P +R+ + + + V + +++PL + E
Sbjct: 149 YRGIEKMLEGKTLLEAKPVIERISGNESIAYQTAWRDIVCQAAGMELPLSLRKRHAFLLE 208
Query: 540 ITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDM 719
+ R+++H+ +G D G + + E + V+G R I LD
Sbjct: 209 MERIIHHLTDLGFIPNDAGFGAALAFASKLSEDARRQLQNVTGHRFGFDAIGFENKVLD- 267
Query: 720 PLGLMDDIYEFSSKFAERIDEVED-VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+ +Y++ + I E ++ +W R G++ D L Y GV+ R
Sbjct: 268 ----ISSLYDYLDGLQKDIAFFETWIMDIPSLW-DRFDTTGILQKADVLKYDTVGVVAR 321
>UniRef50_Q97TG0 Cluster: Periplasmic hydrogenase large subunit,
dehydrogenase; n=8; Clostridium|Rep: Periplasmic
hydrogenase large subunit, dehydrogenase - Clostridium
acetobutylicum
Length = 471
Score = 40.7 bits (91), Expect = 0.049
Identities = 24/92 (26%), Positives = 44/92 (47%)
Frame = +3
Query: 288 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 467
G L +E+ + A+ GLL RG EK+++ + A+ + +R+ + + +
Sbjct: 15 GFLETKVEVTESVITNAETS-GLLFRGFEKMLKTRQPLDAIYFTERICGICSTAHAMAST 73
Query: 468 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHI 563
LA+E L + V + Y+R L + NHI
Sbjct: 74 LALEDALKVSVSINDLYVRDLIHSFEFMQNHI 105
>UniRef50_P33374 Cluster: Uptake hydrogenase large subunit; n=22;
Proteobacteria|Rep: Uptake hydrogenase large subunit -
Alcaligenes hydrogenophilus
Length = 621
Score = 40.7 bits (91), Expect = 0.049
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = +3
Query: 288 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 467
G +R + LD V G + RG E +++ A + +R+ V C+
Sbjct: 28 GHMRCEVNLDANNVIRNAVSTGTMWRGLEVILKRADPADAWAFVERICRVCTGCHALASV 87
Query: 468 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM-AVGTHALD 590
AVE L I +P A IR + A+ ++ +H++ HALD
Sbjct: 88 RAVEDALGIKIPKNAHLIREMMAKTLQVHDHVVHFYHLHALD 129
>UniRef50_Q978D6 Cluster: Formate hydrogenlyase subunit 3; n=1;
Thermoplasma volcanium|Rep: Formate hydrogenlyase
subunit 3 - Thermoplasma volcanium
Length = 389
Score = 39.5 bits (88), Expect = 0.11
Identities = 34/153 (22%), Positives = 66/153 (43%)
Frame = +3
Query: 405 ALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHA 584
AL +R++ + + +AVE LNIDVP +Y R + E+ R+ +++ V
Sbjct: 96 ALLLVERINGFHAASHAVAFEMAVEDALNIDVPEEVQYSRIIMLELERMRSNLEVVKRLC 155
Query: 585 LDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKF 764
G P + RE + +G R + GG + GL+ +
Sbjct: 156 EPAGFGVPQNQIAYLRENIARIITSFAGHRYFFSSSYVGGCQFN---GLV--LESVIEDV 210
Query: 765 AERIDEVEDVLTTNRIWVQRTKDIGVVTAQDAL 863
E + + + L ++I++ R ++ G +++ D L
Sbjct: 211 KEEFEGIFNDLLQSKIFLNRLQNNGKISSSDML 243
>UniRef50_P0ACE2 Cluster: Hydrogenase-2 large chain precursor; n=50;
Bacteria|Rep: Hydrogenase-2 large chain precursor -
Shigella flexneri
Length = 567
Score = 38.3 bits (85), Expect = 0.26
Identities = 27/93 (29%), Positives = 43/93 (46%)
Frame = +3
Query: 288 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 467
G LR+ E++ V A G + RG E++++ + A R+ V +
Sbjct: 15 GHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSV 73
Query: 468 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM 566
A E LNIDVP+ A+YIR + +HI+
Sbjct: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIV 106
>UniRef50_UPI000038DF6E Cluster: hypothetical protein Faci_03001603;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001603 - Ferroplasma acidarmanus fer1
Length = 384
Score = 37.9 bits (84), Expect = 0.35
Identities = 47/211 (22%), Positives = 88/211 (41%)
Frame = +3
Query: 228 AEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQA 407
A+K + N+GP + L GET+R H R + L + ++A
Sbjct: 38 ADKNPGEIYFNYGPSAGGLRESVNFSLLTPGETIRDVIIHPEYKKRDLKILGD--PVSRA 95
Query: 408 LPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHAL 587
L +R++ N Y LAVE+ L I+ +R + E+ R+ ++I +
Sbjct: 96 LLKVERINGFHAASNSIGYILAVEEALGIE-NSELNDMRIVELELERIRSNIDVIKGMCE 154
Query: 588 DVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFA 767
G P L RE++ R G R + G VS D ++ I
Sbjct: 155 SAGFAVPEKQLLYLREEVARIISRAFGHRYFFSVNGFGTVSGDFSTIKLNAI-------E 207
Query: 768 ERIDEVEDVLTTNRIWVQRTKDIGVVTAQDA 860
++ ++ D L +++I++ R ++ G+V +++
Sbjct: 208 KQFRDIYDGLLSSKIFLDRIQENGIVKNENS 238
>UniRef50_O66895 Cluster: Hydrogenase large subunit; n=5;
Bacteria|Rep: Hydrogenase large subunit - Aquifex
aeolicus
Length = 633
Score = 37.5 bits (83), Expect = 0.46
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Frame = +3
Query: 288 GVLRLVLELDGETVRAADP-HIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCY 464
G LR+ + +D ET + D G + RG E ++ + + R+ V +
Sbjct: 14 GHLRIEIMVDEETGQVKDALSAGTMWRGIELIVRNRDPRDVWAFTQRICGVCTSIHALAS 73
Query: 465 SLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM-AVGTHALD 590
AVE L I +P A YIR + ++ +H++ HALD
Sbjct: 74 LRAVEDALEITIPKNANYIRNIMYGSLQVHDHVVHFYHLHALD 116
>UniRef50_Q6L0U1 Cluster: Formate hydrogenlyase subunit 5; n=1;
Picrophilus torridus|Rep: Formate hydrogenlyase subunit
5 - Picrophilus torridus
Length = 381
Score = 36.7 bits (81), Expect = 0.80
Identities = 32/151 (21%), Positives = 61/151 (40%)
Frame = +3
Query: 405 ALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHA 584
A+PY +R++ C+ +V L I++P K + E+ R+ NH+ +
Sbjct: 93 AIPYIERINGNFAASYTICFLSSVMDALEIEIPYELKMYYIIEMELERIRNHLYVLARMC 152
Query: 585 LDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKF 764
G P L +E+ + G R GV+ L DI++ + +
Sbjct: 153 EPAGFNVPANMLMHIKERFSRIIDITFGHRYFF------GVNQLKSKRL--DIHKMINVY 204
Query: 765 AERIDEVEDVLTTNRIWVQRTKDIGVVTAQD 857
I+++ L +R++ R +D G + D
Sbjct: 205 KNEINDIYLNLLNSRLFTDRLQDNGRILDDD 235
>UniRef50_A4M0W7 Cluster: Nickel-dependent hydrogenase, large
subunit; n=1; Geobacter bemidjiensis Bem|Rep:
Nickel-dependent hydrogenase, large subunit - Geobacter
bemidjiensis Bem
Length = 559
Score = 36.3 bits (80), Expect = 1.1
Identities = 27/93 (29%), Positives = 44/93 (47%)
Frame = +3
Query: 288 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 467
G LR+ +E +G V A + RG E +++ + A + R V +
Sbjct: 14 GHLRIDVEANGGKVTNAWSS-AQMWRGIEVILKGRAPEDAWSFVQRFCGVCTTVHAISSI 72
Query: 468 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM 566
AVE LN++VPL A+YIR + + +HI+
Sbjct: 73 RAVEHALNVEVPLNAQYIRNIMIAQHSVQDHIV 105
>UniRef50_A6DBU3 Cluster: Nickel-dependent hydrogenase, large
subunit; n=1; Caminibacter mediatlanticus TB-2|Rep:
Nickel-dependent hydrogenase, large subunit -
Caminibacter mediatlanticus TB-2
Length = 386
Score = 35.1 bits (77), Expect = 2.4
Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Frame = +3
Query: 360 HRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAE 539
+RG E+ + + + AL R+ + + + A+E LN+ + +A+ +R + +
Sbjct: 36 YRGIEQYLVNRHFLDALVINPRICGICGHAHLLATAKAIENALNLKITKKAEILRDITSG 95
Query: 540 ITRLLNHI--MAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSL 713
+ + NHI + + + + +K+ + + G H +YI PGGV+
Sbjct: 96 LEIIQNHIKWFYLTLYPTQIKDKSYILKALNIVKKISKIIAIIGGQFPHNSYIIPGGVTC 155
Query: 714 DM 719
D+
Sbjct: 156 DL 157
>UniRef50_A4M324 Cluster: Nickel-dependent hydrogenase, large
subunit; n=3; Bacteria|Rep: Nickel-dependent
hydrogenase, large subunit - Geobacter bemidjiensis Bem
Length = 571
Score = 35.1 bits (77), Expect = 2.4
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = +3
Query: 288 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 467
G LR+ LE +G + A RG EK++E + A + R+ V +
Sbjct: 16 GHLRIELEAEGGRIGNAWA-CATQFRGIEKILEGRDPRDAWAFAQRICGVCTGVHAIASI 74
Query: 468 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM-AVGTHALD 590
AVE + +P A+ IR L + + L +H+M HALD
Sbjct: 75 RAVEDAIKCRIPESAELIRNLVSGMATLQDHVMHFYHLHALD 116
>UniRef50_UPI000155602C Cluster: PREDICTED: similar to pericentrin
B; n=1; Ornithorhynchus anatinus|Rep: PREDICTED: similar
to pericentrin B - Ornithorhynchus anatinus
Length = 3068
Score = 34.3 bits (75), Expect = 4.3
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = -2
Query: 884 HTAEAVVERVLRSDHADVLGPLHPDPVGGEHVLHLVDALGELRRELVDVVHQTQRHVK 711
H E E VL +DH L L + +H L + + +REL D++ Q +RH+K
Sbjct: 399 HVKEEGAENVLENDHRAKLLLLQSEK---QHTSELKEEIEHFKRELQDIIVQHERHLK 453
>UniRef50_Q4DZG8 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein -
Trypanosoma cruzi
Length = 1951
Score = 33.5 bits (73), Expect = 7.4
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -1
Query: 396 MSCIRSVFQYHGAGDLCEDLLHGLSLRPVPVRDAAPRER 280
+ C+ + F HG+G + D+L + +RP+ ++ A R+R
Sbjct: 1039 VECVLASFSIHGSGPIFVDVLFDVEIRPIRPQEGADRKR 1077
>UniRef50_A4WKM9 Cluster: Methyltransferase type 11; n=4;
Pyrobaculum|Rep: Methyltransferase type 11 - Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321)
Length = 252
Score = 33.5 bits (73), Expect = 7.4
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 495 DVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
D LR +Y RTL+ +I +L+ + G LD+GA T F+
Sbjct: 21 DKYLRTEYYRTLYRKIGEVLDKYINAGMRVLDIGAGTGFW 60
>UniRef50_A3H5B9 Cluster: Endonuclease V; n=1; Caldivirga
maquilingensis IC-167|Rep: Endonuclease V - Caldivirga
maquilingensis IC-167
Length = 228
Score = 33.5 bits (73), Expect = 7.4
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +3
Query: 471 AVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG-ALTPFFWLFEEREKMME 647
+V+ + IDV R Y + A + LNHI+ G + +V P F E M++
Sbjct: 43 SVDLITGIDVAYRGNYAYAVAATYSMRLNHIIEYGCYEGEVTFPYVPTLLSFRELSPMIK 102
Query: 648 FYERVSGARMHAAYIRPGGVSLDMPLGL 731
+ R+ R H I GV+ LG+
Sbjct: 103 AFMRLK-ERPHVVLIDGHGVAHPYRLGI 129
>UniRef50_Q9H7P9 Cluster: Pleckstrin homology domain-containing
family G member 2; n=24; Euteleostomi|Rep: Pleckstrin
homology domain-containing family G member 2 - Homo
sapiens (Human)
Length = 1386
Score = 33.1 bits (72), Expect = 9.8
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 732 MDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
++DIYEFSS+ E ++ +VQR++D + T +NY S +LR
Sbjct: 152 IEDIYEFSSELLEDLENSSSAGGIAECFVQRSEDFDIYTLY-CMNYPSSLALLR 204
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 885,037,648
Number of Sequences: 1657284
Number of extensions: 18597909
Number of successful extensions: 57660
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 54909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57593
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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