Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30018
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 28 2.1
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 28 2.1
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 27 3.6
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 27 4.8
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 4.8
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 26 6.3
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 26 6.3
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 6.3
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 26 6.3
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|... 26 8.3
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi... 26 8.3
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 26 8.3
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 26 8.3
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 26 8.3
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 630 REKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIY 746
++KMMEF+ + + H I + P+ DD+Y
Sbjct: 390 KDKMMEFFNSLQQSNQHYVPIIDAAIYAANPINRSDDVY 428
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 252 SCCVLSFRPVL*CCYKEQVSMIWST 178
SC +L +PV C Y E+++ W T
Sbjct: 289 SCTILKSKPVSLCVYPEKITFNWLT 313
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 549 LLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 707
L NH +A G H D+ +TP F + K + FY G + I PG +
Sbjct: 814 LSNHPIAGGVHLPDLTVVTPVF----DNNKDIIFYCAARGHMVDVGGITPGSM 862
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 132 PDFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRNM--ILNFGPQHPAAHGVLRLV 305
P++ + EG + + +K PVP +S P E N+ F HP + +LRL+
Sbjct: 32 PEYNSEEEGTLPLYSDISKLANPVPEDSSTGPTEIANPNVERRQEFKDSHPNIYFLLRLL 91
Query: 306 LEL 314
+ +
Sbjct: 92 ISV 94
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 383 DQFFSTTVQETYVRICCTDCLSVQFQYETQHPVSGWML 270
D+ S TV E+Y +I C + + Q H + GW L
Sbjct: 1901 DKEKSCTVSESYKQIDCDTYEATRLQKLLLHSIGGWPL 1938
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 102 QRDGHRWFPDPDFVKQFEGPV 164
Q DG + D +FV+QFE PV
Sbjct: 50 QEDGSEVYVDREFVEQFECPV 70
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +3
Query: 411 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNH 560
P++D + V C++ Y K++ + R + ++T + RLL H
Sbjct: 418 PHYDSM-LVKCTCHDATYEYTRRKMIRSLIEFRVRGVKTNIPFVLRLLMH 466
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 213 CYKEQVSMIWSTHQDT*LALQIVSQSLDQGTNGAHLFG-SSH 91
CY EQ + + H+DT +++V+ +L+ + F +SH
Sbjct: 578 CYLEQCLRLNTLHEDTTFPMRVVNYALEYSSKALDKFAENSH 619
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 747 EFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVV 845
E+ +K+ R E DVL NR+ Q KD+G++
Sbjct: 228 EYINKYRGRYSEGPDVLRKNRL--QAQKDLGLI 258
>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 132 PDFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRNM--ILNFGPQHPAAHGVLRLV 305
P++ + EG + + +K PVP +S P E N+ F HP + +LRL+
Sbjct: 32 PEYNSEEEGALPPYSDISKLANPVPEDSSTGPTEIANPNVERRQEFKDSHPNIYFLLRLL 91
Query: 306 LEL 314
+ +
Sbjct: 92 ISV 94
>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
Tom22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 570 VGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMP 722
+ T AL +G PF EE ++ E+ +++ R I PG S +P
Sbjct: 95 ISTSALLLGV--PFMMSLEEEAQLTEYEKQIKDQRGANEVIAPGATSGALP 143
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 184 VDSSGYMTGPSNCFTKS 134
VD+SGY+T PSN +S
Sbjct: 130 VDASGYVTDPSNLIERS 146
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 25.8 bits (54), Expect = 8.3
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 292 CCVSYWNWTER 324
CC+S W+WT R
Sbjct: 157 CCLSNWSWTHR 167
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 383 DQFFSTTVQETYVRICCTDCL 321
D+FF T Q VR C DCL
Sbjct: 414 DRFFPGTFQTGVVRTNCVDCL 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,253
Number of Sequences: 5004
Number of extensions: 72007
Number of successful extensions: 235
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -