Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30018
(894 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79601-2|CAB01886.1| 482|Caenorhabditis elegans Hypothetical pr... 372 e-103
U00043-9|AAC77506.1| 474|Caenorhabditis elegans Temporarily ass... 371 e-103
AC006723-6|AAF59425.1| 492|Caenorhabditis elegans Hypothetical ... 31 1.5
Z92809-3|CAB07269.1| 440|Caenorhabditis elegans Hypothetical pr... 29 4.5
AC084154-8|AAK29877.1| 69|Caenorhabditis elegans Hypothetical ... 29 4.5
U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein. 28 7.8
U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated p... 28 7.8
AJ512486-1|CAD54736.1| 559|Caenorhabditis elegans core alpha-6-... 28 7.8
AF022968-8|AAN84870.1| 559|Caenorhabditis elegans Fucosyl trans... 28 7.8
AF022968-1|ABR92613.1| 219|Caenorhabditis elegans Protein carbo... 28 7.8
>Z79601-2|CAB01886.1| 482|Caenorhabditis elegans Hypothetical
protein K09A9.5 protein.
Length = 482
Score = 372 bits (914), Expect = e-103
Identities = 170/224 (75%), Positives = 196/224 (87%)
Frame = +3
Query: 222 KPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYT 401
K EK + NMILNFGPQHPAAHGVLRLVL+L+GE + A PHIGLLHR TEKLIE+KTYT
Sbjct: 90 KQREKNLENMILNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYT 149
Query: 402 QALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTH 581
QALPYFDRLDYVSMMCNEQ +SLAVEKLL ID+P RAKYIRTL E+TR+ NHIM + TH
Sbjct: 150 QALPYFDRLDYVSMMCNEQAWSLAVEKLLGIDIPTRAKYIRTLMGELTRIQNHIMGITTH 209
Query: 582 ALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSK 761
ALDVGA+TPFFW+FEEREK+ EF ERVSGARMHA Y+RPGGV+ D+P+GLMDDIY+++ K
Sbjct: 210 ALDVGAMTPFFWMFEEREKLFEFSERVSGARMHANYVRPGGVAWDLPIGLMDDIYDWAIK 269
Query: 762 FAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
F ERIDE+ED+LT NRIW RT DIG+V+A DALN+GFSGVM+R
Sbjct: 270 FPERIDELEDMLTENRIWKARTIDIGLVSAADALNWGFSGVMVR 313
>U00043-9|AAC77506.1| 474|Caenorhabditis elegans Temporarily
assigned gene nameprotein 99 protein.
Length = 474
Score = 371 bits (913), Expect = e-103
Identities = 184/297 (61%), Positives = 222/297 (74%), Gaps = 21/297 (7%)
Frame = +3
Query: 66 LKNIPAVHNVNSQRDGHR-WFPDPDFVKQFE-GPVM-----------YPDE-STKSLKPV 203
L+ + S RD H W+PD F +QF+ G + + D+ L+ +
Sbjct: 9 LRAVACARPAISNRDSHTIWYPDAKFERQFKTGGTLGKLWMSERVSDFDDQIGLDKLEKL 68
Query: 204 PYNSII-------KPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLH 362
Y+ + K EK + NMILNFGPQHPAAHGVLRLVL+L+GE + A PHIGLLH
Sbjct: 69 AYSDPVLSDNYEGKKREKNLENMILNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLH 128
Query: 363 RGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEI 542
R TEKLIE+KTYTQALPYFDRLDYVSMMCNEQ +SLA+EKLL IDVP RAKYIR LF E+
Sbjct: 129 RATEKLIEHKTYTQALPYFDRLDYVSMMCNEQAFSLAIEKLLGIDVPPRAKYIRILFGEL 188
Query: 543 TRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMP 722
TR+ NHIM + THALDVGA+TPFFW+FEEREK+ EF ERVSGARMHA Y+RPGGV+ D+P
Sbjct: 189 TRIQNHIMGITTHALDVGAMTPFFWMFEEREKLFEFSERVSGARMHANYVRPGGVAWDLP 248
Query: 723 LGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
+GLMDDIY+++ KF RIDE+ED+LT NRIW RT DIG+V+A DALN+GFSGVM+R
Sbjct: 249 VGLMDDIYDWAVKFPARIDELEDMLTENRIWKARTVDIGLVSASDALNWGFSGVMVR 305
>AC006723-6|AAF59425.1| 492|Caenorhabditis elegans Hypothetical
protein Y19D10B.6 protein.
Length = 492
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 393 TYTQALPYF--DRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHI 563
T T L YF +Y+S + + +S AVE L N+++ L + +L+A I ++LN +
Sbjct: 92 TATVDLEYFFETHYEYISKKNDSEKFSFAVETLENVNLTLTNIFYNSLYANI-KVLNQL 149
>Z92809-3|CAB07269.1| 440|Caenorhabditis elegans Hypothetical
protein R17.3 protein.
Length = 440
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 468 DCSTARCTSWTRSPDGRSTAGLGCMSCIRSVFQY-HGAGDLCEDL 337
DC SWT+ T G+G +R V Q+ G CE L
Sbjct: 243 DCVLTDWDSWTQCTADNGTCGIGTQKRLRHVIQHAERGGAACEPL 287
>AC084154-8|AAK29877.1| 69|Caenorhabditis elegans Hypothetical
protein Y22D7AR.10 protein.
Length = 69
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 148 CFTKSGSGNQRCPSLWEF 95
CF KS SG++ CP WEF
Sbjct: 29 CFPKSISGSRCCPDGWEF 46
>U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein.
Length = 777
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 621 FEEREKMMEFYERVSGARMHAAYIRPGGVSLD 716
+EE ++ +++ERV ARM + ++PGG L+
Sbjct: 189 YEEIKEGFDYWERVINARMMSDSMKPGGDILE 220
>U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated
protein 8 protein.
Length = 777
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 621 FEEREKMMEFYERVSGARMHAAYIRPGGVSLD 716
+EE ++ +++ERV ARM + ++PGG L+
Sbjct: 189 YEEIKEGFDYWERVINARMMSDSMKPGGDILE 220
>AJ512486-1|CAD54736.1| 559|Caenorhabditis elegans core
alpha-6-fucosyltransferase protein.
Length = 559
Score = 28.3 bits (60), Expect = 7.8
Identities = 27/104 (25%), Positives = 41/104 (39%)
Frame = +3
Query: 495 DVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGAR 674
D P Y T A+ +L N T A +G +T + L + + F +V R
Sbjct: 407 DYPNYEVYGSTEIAKTAQLNNRY----TDASLMGVITDIYILSKVNYLVCTFSSQV--CR 460
Query: 675 MHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTN 806
M +P G +DDIY F + A + +ED + N
Sbjct: 461 MGYELRQPSGADDGSKFHSLDDIYYFGGQQAHEVIVIEDHIAQN 504
>AF022968-8|AAN84870.1| 559|Caenorhabditis elegans Fucosyl
transferase protein 8 protein.
Length = 559
Score = 28.3 bits (60), Expect = 7.8
Identities = 27/104 (25%), Positives = 41/104 (39%)
Frame = +3
Query: 495 DVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGAR 674
D P Y T A+ +L N T A +G +T + L + + F +V R
Sbjct: 407 DYPNYEVYGSTEIAKTAQLNNRY----TDASLMGVITDIYILSKVNYLVCTFSSQV--CR 460
Query: 675 MHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTN 806
M +P G +DDIY F + A + +ED + N
Sbjct: 461 MGYELRQPSGADDGSKFHSLDDIYYFGGQQAHEVIVIEDHIAQN 504
>AF022968-1|ABR92613.1| 219|Caenorhabditis elegans Protein
carboxymethyltransferaseprotein 1, isoform b protein.
Length = 219
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 495 DVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGA 599
D P R Y T A + L NH++A G ALDVG+
Sbjct: 48 DAPQRIGYNATHAAALDYLQNHLVA-GAKALDVGS 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,098,580
Number of Sequences: 27780
Number of extensions: 431226
Number of successful extensions: 1323
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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