Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30018
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   5.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 207 YNSIIKPAEKKVRNMILNFG 266
           YN +I+P +     + +NFG
Sbjct: 38  YNKLIRPVQNMTEKVHVNFG 57


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 510 PAEEHRCSAASRRPDCSTARC 448
           P ++HR S+AS      T RC
Sbjct: 279 PVKQHRSSSASTTCSGHTVRC 299


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 789 DVLTTNRIWVQRTKDIGV 842
           D+ T   IW + TKDI +
Sbjct: 429 DIRTEELIWARGTKDIPI 446


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 789 DVLTTNRIWVQRTKDIGV 842
           D+ T   IW + TKDI +
Sbjct: 519 DIRTEELIWARGTKDIPI 536


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,254
Number of Sequences: 438
Number of extensions: 5003
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)