Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30017
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.4  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   1.9  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   7.7  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   7.7  

>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 502 DNDVVPEGYHYLYETENKI 558
           DND+ PE Y  LYE E+K+
Sbjct: 132 DNDLEPEVYDILYEEESKL 150


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 121 KPGRYVADPGRYDPSRDN 174
           KPG YV+D   Y P +DN
Sbjct: 235 KPGSYVSDRASYTPQQDN 252


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 653 TPSGPTYS*NPLTL-MPSXSVPTFSTLPASSARILFSVSYK*W*PSGTTS 507
           +P+G   S    TL M   S P FS   + S+++  SVSY    PS ++S
Sbjct: 146 SPTGTAVSSQISTLSMSPSSTPVFSPSASVSSKVASSVSYVSSEPSDSSS 195


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +2

Query: 521 KATTTCTRPRTRFSLKKPA----RSRTLAPXTKASRSRDSTNTLAPTVS 655
           K TTT +   T FS  KPA     ++  AP +  ++   ST    PT S
Sbjct: 286 KGTTTTSSAGTGFSFGKPATTEDTNKPTAPNSAFTKPATSTGDNKPTFS 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,496
Number of Sequences: 5004
Number of extensions: 36916
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)