Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30017
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical ...    31   1.0  
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    28   5.4  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    28   5.4  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    28   5.4  
Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type tran...    28   7.1  
AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like tran...    28   7.1  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical
           protein F52G3.5 protein.
          Length = 386

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 527 TTTCTRPRTRFSL-KKPARSRTLAPXTKASRSRDSTNTLAPTVSPTE*TT 673
           TTT   P T     KK  ++R+  P T  + +  +T T APT +  E TT
Sbjct: 195 TTTTEEPSTTSEYRKKSKKNRSKRPKTTKTTTTSTTTTEAPTTTTEEYTT 244


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 30  VYDSGAGRRNWKVHSFPVQPSLLY 101
           +Y    GR++WK H F ++PS LY
Sbjct: 334 LYLKSDGRKSWKKHYFVLRPSGLY 357


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 30  VYDSGAGRRNWKVHSFPVQPSLLY 101
           +Y    GR++WK H F ++PS LY
Sbjct: 351 LYLKSDGRKSWKKHYFVLRPSGLY 374


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 30  VYDSGAGRRNWKVHSFPVQPSLLY 101
           +Y    GR++WK H F ++PS LY
Sbjct: 463 LYLKSDGRKSWKKHYFVLRPSGLY 486


>Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical
           protein F33H1.1b protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 457 PSGAGYDYKYGIIRYDNDVVPEGYHYLYETEN 552
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209


>Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical
           protein F33H1.1a protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 457 PSGAGYDYKYGIIRYDNDVVPEGYHYLYETEN 552
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184


>AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type
           transcription factor DAF-19 short variant protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 457 PSGAGYDYKYGIIRYDNDVVPEGYHYLYETEN 552
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184


>AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like
           transcription factor DAF-19 protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 457 PSGAGYDYKYGIIRYDNDVVPEGYHYLYETEN 552
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 527 TTTCTRPRTRFSLKKPARSRTLAPXTKA-SRSRDSTNTLAPTVSPTE*TT 673
           TTT T   T       + + T  P T   + ++ +T T  PT +PT  TT
Sbjct: 236 TTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTT 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,553,199
Number of Sequences: 27780
Number of extensions: 224523
Number of successful extensions: 715
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)