Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30015X
(520 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 179 2e-46
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 88 8e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 84 1e-17
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 77 2e-15
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 69 3e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 56 2e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 3e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 46 3e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.96
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 1.7
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 5.1
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 6.8
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 6.8
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 179 bits (436), Expect = 2e-46
Identities = 81/90 (90%), Positives = 87/90 (96%)
Frame = -1
Query: 520 DVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSI 341
DVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSI
Sbjct: 286 DVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSI 345
Query: 340 LASLSTFQQMWISKEEYDESGPGIVHRKCF 251
LASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 346 LASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 87.8 bits (208), Expect = 8e-19
Identities = 39/90 (43%), Positives = 63/90 (70%)
Frame = -1
Query: 520 DVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSI 341
D+D+R LY+N V+SGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSI
Sbjct: 291 DIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSI 350
Query: 340 LASLSTFQQMWISKEEYDESGPGIVHRKCF 251
LASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 351 LASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 83.8 bits (198), Expect = 1e-17
Identities = 41/95 (43%), Positives = 63/95 (66%), Gaps = 6/95 (6%)
Frame = -1
Query: 520 DVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIG 350
DVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+G
Sbjct: 339 DVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLG 397
Query: 349 GSILASLSTFQQMWISKEEYDESGP---GIVHRKC 254
GSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 398 GSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 77.0 bits (181), Expect = 2e-15
Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Frame = -1
Query: 520 DVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPER-KYSVWIGG 347
D ++R L N V++GGT++ PG+++R+Q E+ LA S I + +VW GG
Sbjct: 336 DSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGG 395
Query: 346 SILASLSTFQQMWISKEEYDESG 278
SILASL FQ +W+SK+EYDE G
Sbjct: 396 SILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 69.3 bits (162), Expect = 3e-13
Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 12/93 (12%)
Frame = -1
Query: 520 DVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL--------APSTI---KIKIIAPPE 374
DVDIRK LY V+SGG++MY G+ R++KEI L P+ + K+KI P
Sbjct: 286 DVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPR 345
Query: 373 RKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 278
R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 346 RRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 56.4 bits (130), Expect = 2e-09
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Frame = -1
Query: 517 VDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI--------------KIKIIAP 380
+D+RK LY N V+SGG+T++ +R+Q+++ + I + +I+
Sbjct: 320 IDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISH 379
Query: 379 PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 260
++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 380 KRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.4 bits (105), Expect = 3e-06
Identities = 21/78 (26%), Positives = 40/78 (51%)
Frame = -1
Query: 508 RKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 329
++ L +N +++GG PG+ R+++E+T++ P I + W G S +
Sbjct: 631 QQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVT 690
Query: 328 STFQQMWISKEEYDESGP 275
F+ +++EEY E GP
Sbjct: 691 EKFKAAKVTREEYLEKGP 708
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 46.0 bits (104), Expect = 3e-06
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = -1
Query: 514 DIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 335
+I+ L N V GG +PG R+ E+ +LAP+ ++K+ P + W S +
Sbjct: 314 NIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM- 372
Query: 334 SLSTFQQMWISKEEYDESGPGIVHRK 257
L + I++ EY E G I+ RK
Sbjct: 373 PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 505 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 335
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 334 SLSTFQQMWISKEEYDESGPGIVHRK 257
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.96
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 358 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 257
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 433 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 323
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 195 ELGRAQHHTAPGSRGRAA*KHLRWT 269
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 407 DHQDQDHRSPREEVLRMDRWIHPG 336
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 204 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 37
VR +A S +L P N SN TP+ + I K N+ S + L D C R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 366 YFLSGGAMILILMVEGARAVISFCILSAIPGY 461
Y +SGGA + +A +S CI +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,448
Number of Sequences: 5004
Number of extensions: 32215
Number of successful extensions: 89
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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