Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30012X
         (545 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.3  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   7.0  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   9.3  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 187 ILGAKDDVAPTSPPT 143
           IL  K  V+PT+PPT
Sbjct: 86  ILAEKVSVSPTTPPT 100


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 316 EQQLSGLVCFELSAA 272
           E+ + GLVCF L A+
Sbjct: 400 EEVVLGLVCFRLKAS 414


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 112 QMKLKS*ICDVSAGKSVPHHLWPLK 186
           Q  ++  +C++S    +P H+W  K
Sbjct: 273 QFNIEMFLCNMSLLTVIPIHVWTSK 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,928
Number of Sequences: 336
Number of extensions: 3185
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)