Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30012X
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 180 2e-46
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 180 2e-46
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.34
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 1.8
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 2.4
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 27 2.4
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 4.2
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 7.3
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 7.3
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 25 9.6
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 180 bits (437), Expect = 2e-46
Identities = 80/117 (68%), Positives = 104/117 (88%)
Frame = +1
Query: 193 PLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAVVPYAAALIIRALKEPPRDRK 372
PLGLSPKKVG+DIAKAT DWKGL++TV+LT+QNRQA ++VVP A+AL+I+ALKEP RDRK
Sbjct: 34 PLGLSPKKVGEDIAKATKDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRK 93
Query: 373 KQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPSHD 543
K KN+ H+GN+SL+++I +A+ MR +S+A+ LSG+VKEILGTA SVGCTV+G+ HD
Sbjct: 94 KDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHD 150
Score = 52.4 bits (120), Expect = 4e-08
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +3
Query: 93 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKI 188
MPPKFDPNE+K + +R VGGEV S+LAPKI
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKI 32
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 180 bits (437), Expect = 2e-46
Identities = 80/117 (68%), Positives = 104/117 (88%)
Frame = +1
Query: 193 PLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAVVPYAAALIIRALKEPPRDRK 372
PLGLSPKKVG+DIAKAT DWKGL++TV+LT+QNRQA ++VVP A+AL+I+ALKEP RDRK
Sbjct: 34 PLGLSPKKVGEDIAKATKDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRK 93
Query: 373 KQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPSHD 543
K KN+ H+GN+SL+++I +A+ MR +S+A+ LSG+VKEILGTA SVGCTV+G+ HD
Sbjct: 94 KDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHD 150
Score = 52.4 bits (120), Expect = 4e-08
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +3
Query: 93 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKI 188
MPPKFDPNE+K + +R VGGEV S+LAPKI
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKI 32
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 29.5 bits (63), Expect = 0.34
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -1
Query: 530 LPSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAIPI-TSSREMLPL 393
LPS + P V R+ ++PE DLFL I A+ + TSS+ +LPL
Sbjct: 1465 LPS-LPPLIDLVKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 187 SIPLGLS--PKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAV-VPYAA 327
S PLG+ PKK+ +++A+ G+K+T +VQ+ I V PY A
Sbjct: 379 SYPLGVHMLPKKLDEEVARLHLGKLGVKLTTLTSVQSDYLGIPVDGPYKA 428
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 321 IGNNSYLGLSVLNCQLHSDLETLPVTCGLGNVITHLFRRQTKR 193
IGN Y G+ +L S LE + C VI +RQT R
Sbjct: 726 IGNQIYEGILQNEKELRSKLEAYHINC--NKVIKEFSKRQTAR 766
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 26.6 bits (56), Expect = 2.4
Identities = 18/76 (23%), Positives = 31/76 (40%)
Frame = +1
Query: 262 KITVQLTVQNRQAQIAVVPYAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIM 441
K + Q ++ N + V + L LKE +D++K ++ S + A+
Sbjct: 23 KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82
Query: 442 RNRSMARYLSGSVKEI 489
RNR L +V I
Sbjct: 83 RNRKARENLKVNVSSI 98
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 527 PSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAIPITSSREMLPLCLIF 381
P+ +P + PR T +R + + + P TSSR LPL +++
Sbjct: 213 PTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMY 261
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 172 DDVAPTSPPTHRKFTILI 119
D++A T PP HRK IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 120 IKIVNLRCVGGEVGATSSLAPKIHSSWSVS 209
I I N +C G T S P IH++ S+S
Sbjct: 74 ITITNSQCTGNYSTLTISSQPLIHTNTSIS 103
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 24.6 bits (51), Expect = 9.6
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 334 IIRALKEPPRD-RKKQKNIKH-NGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQS 507
I+R +KE + RK +K + G+IS DVI ++ + YL KE+LG A +
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,010
Number of Sequences: 5004
Number of extensions: 50745
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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