Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30011
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    29   0.076
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.71 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   2.2  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   3.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.8  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   3.8  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   3.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   5.0  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   8.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   8.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 0.076
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 249 SVPLIVGFVLVVAVQNVAMIYAGRVFWGLAVGM 347
           S PLI+G    + VQ++ +  AGR+F  L  GM
Sbjct: 175 SCPLILGSCKCIYVQSINLCMAGRLFGYLCPGM 207


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 470 RSHSVHQQEAKHYEQLKERSQ 408
           R HS ++Q+ K  EQ++ER +
Sbjct: 57  RQHSKNEQQRKEMEQMRERER 77


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 176 SYVRSIHRRFPGFKNRSSMEYSSVICSTHSRFCFGGGRSK 295
           S V+  H   P  ++RSS   +S  CS H+  CF GG  K
Sbjct: 269 SDVQPGHGSPPVKQHRSSS--ASTTCSGHTVRCFTGGPRK 306


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 614 DDLQTFSSRVYVVLVQIIHRGFRHEEEQ 531
           +DL+TF  ++ +     +HR F H  ++
Sbjct: 104 EDLKTFFHKIALTCEDDVHRKFLHVNDE 131


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 89  EALRS*RHTLVATRHQRRNIMDRIPSLRRSYV 184
           E L   R  +   R+QR+N++DR+  + R  V
Sbjct: 433 EYLNHLRANVAEGRNQRKNVLDRLFRMDRDAV 464


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -2

Query: 429 TAEGTIPGHRACRPWRSRRSTSAKPYT-AYRLPDPRTLCRRKSLQHFERPPPK 274
           +A  ++ GHR     R R +   KPY   ++ P P+ L   +    F    PK
Sbjct: 40  SASNSVHGHREGLGRRHRYNFQLKPYNPEHKPPGPKDLVYLEPSPPFCEKNPK 92


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -2

Query: 429 TAEGTIPGHRACRPWRSRRSTSAKPYT-AYRLPDPRTLCRRKSLQHFERPPPK 274
           +A  ++ GHR     R R +   KPY   ++ P P+ L   +    F    PK
Sbjct: 41  SASNSVHGHREGLGRRHRYNFQLKPYNPEHKPPGPKDLVYLEPSPPFCEKNPK 93


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 608 LQTFSSRVYVVLVQIIHRGFR 546
           L TF+S + VV + + HRG R
Sbjct: 285 LVTFASALAVVTLNLHHRGVR 305


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 570 NQDDVDSAAKCLQ 608
           + DD+++ AKCLQ
Sbjct: 335 SSDDINTKAKCLQ 347


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 170 RRSYVRSIHRRFPGFKN-RSSMEYSSVICSTHSRFCFGGGRSK 295
           RR Y RS  R    +KN R   EY        SR   G GRS+
Sbjct: 284 RRRYSRSREREQKSYKNEREYREYRET-SRERSRDRRGRGRSR 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,850
Number of Sequences: 438
Number of extensions: 6295
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)